RE: [Condor-users] Help:How to change the arguments in the submitfile?

["Philip Crawford" <p.crawford@xxxxxxxxxxx>]

ï

I've been using a pair of shellscripts to generate some jobs. The outer one has 5 parameters, one of which is a list of data files to process.

I use the "foreach" construct which is C-shell specific. This generates a submit file which contains nearly 300 jobs. The inner script is the script "build_input" which builds separate input files for each job. (The executable has many parameters.)

If the list of files is "files.lst" it is passed as a parameter to the script which asigns it to a variable "list_name",

foreach f (`cat ${list_name}`)
 set db = ${f:r}
        ./build_input $db $max_mols $rank_mols
        echo "transfer_input_files = ${db}.in, ${f}, ... etc" >> ${submit_file}
 echo "Arguments = -i ${db}.in -o ${db}.out.txt\n" >> ${submit_file}
 echo "Queue\n\n" >> ${submit_file}
end

Depending on how your parameters vary, you may need some nested for loops to do something similar.

Hope this helps.

 

Cheers,

 

Phil Crawford

__________________________________________________

Philip Crawford, B. Comp. Sc., MIEEE

Structural BioInformatics and Drug Design Group

http://www.sbio.med.unsw.edu.au/sbio

School of Medical Sciences

The University of NSW

Phone: +61-2-9385 2564

Mobile: +61-419-294 698

Fax: +61-2-9385 1059

Email: p.crawford@xxxxxxxxxxx

__________________________________________________

 

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From: condor-users-bounces@xxxxxxxxxxx [mailto:condor-users-bounces@xxxxxxxxxxx] On Behalf Of Bruno Goncalves
Sent: Tuesday, 6 September 2005 4:24 AM
To: Condor-Users Mail List
Subject: Re: [Condor-users] Help:How to change the arguments in the submitfile?

You can do something like this:

Arguments = arg1 arg2 
arg3...
Queue 1
Arguments = arg1' arg2' arg3' ...
Queue 
1
etc...

Just list all the different input arguments you need to run 
and queue a different job for each of them.

On 9/5/05, éæ <lumiousy@xxxxxxxxxxxx> wrote:

     I have to run a program with a lot of different arguments, but i don't know how to change them  automatically.

     Could anybody help me please?

     for example: the program test.exe have 5 arguments, the first is constant 5,the second varies from 0 to 100, so does the third and the forth.How can i write the submit file to let the job run with different arguments by themselves .

        I am looking forward to it!!! Thank you!!!

 

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Tavares Goncalves, MS
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