Re: [HTCondor-users] submitted jobs are not running

[Labounek Renà <xlabou01@xxxxxxxxxxxxxxxxxx>]

Ben,

you are right in error file is written something like that:

slice_0033.error:
/usr/share/fsl/5.0/bin/bedpostx_single_slice.sh: 1:  
/usr/share/fsl/5.0/bin/bedpostx_single_slice.sh: /bin/zeropad: not found
/usr/share/fsl/5.0/bin/bedpostx_single_slice.sh: 76:  
/usr/share/fsl/5.0/bin/bedpostx_single_slice.sh: /bin/xfibres: not found

I undertand it can not find two other libraries zeropad and xfibres,  
but when I am running the slice_0033.sh script (Executable in  
condor_submit) directly in terminal, the script works well.

labounek@emperor:~/test/dti.bedpostX/condor_logs$ ./slice_0033.sh
labounek@emperor:~/test/dti.bedpostX/condor_logs$

slice_0033.sh:
#!/bin/sh
/usr/share/fsl/5.0/bin/bedpostx_single_slice.sh  
/home/labounek/test/dti 33 --nf=3 --fudge=1 --bi=1000 --nj=1250  
--se=25 --model=2 --cnonlinear

So unfortunately, I am still lost :-( Could the problem be e.g. the  
Universe? Or should I set something more in slice_0033.condor file?

slice_0033.condor:
Executable = /home/labounek/test/dti.bedpostX/condor_logs/slice_0033.sh
Universe = vanilla
Output = /home/labounek/test/dti.bedpostX/condor_logs/slice_0033.out
Error = /home/labounek/test/dti.bedpostX/condor_logs/slice_0033.error
Log   = /home/labounek/test/dti.bedpostX/condor_logs/slice_0033.log
Queue

Kind Regards,
Rene

Cituji Ben Cotton <ben.cotton@xxxxxxxxxxxxxxxxxx>:

> Rene,
>
> The output suggests that your jobs ran and completed very quickly. If
> you have Output and Error defined in your submit file, I'd look in
> those locations to see what output your job produced. That may give
> you an indication of why it completed so quickly.
>
>
> Thanks,
> BC
>
> --
> Ben Cotton
>
> Cycle Computing
> Better Answers. Faster.
>
> http://www.cyclecomputing.com
> twitter: @cyclecomputing
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