Re: [HTCondor-users] submitted jobs are not running

[Labounek René <xlabou01@xxxxxxxxxxxxxxxxxx>]

Cituji Labounek René <xlabou01@xxxxxxxxxxxxxxxxxx>:

> Dear condor users,
> I have submitted jobs but they are still held and not running.  
> Condor_status looks ok:
>
>
>
> labounek@emperor:~$ condor_status
> Name               OpSys      Arch   State     Activity LoadAv Mem    
> ActvtyTime
>
> slot10@xxxxxxxxxxx LINUX      X86_64 Unclaimed Idle      1.000 2682   
> 0+00:00:23
> slot11@xxxxxxxxxxx LINUX      X86_64 Unclaimed Idle      1.000 2682   
> 0+00:00:24
> slot12@xxxxxxxxxxx LINUX      X86_64 Unclaimed Idle      6.320 2682   
> 0+00:00:25
> slot1@xxxxxxxxxxxx LINUX      X86_64 Unclaimed Idle      1.000 2682   
> 0+00:00:04
> slot2@xxxxxxxxxxxx LINUX      X86_64 Unclaimed Idle      1.000 2682   
> 0+00:00:23
> slot3@xxxxxxxxxxxx LINUX      X86_64 Unclaimed Idle      1.000 2682   
> 0+00:00:24
> slot4@xxxxxxxxxxxx LINUX      X86_64 Unclaimed Idle      1.000 2682   
> 0+00:00:25
> slot5@xxxxxxxxxxxx LINUX      X86_64 Unclaimed Idle      1.000 2682   
> 0+00:00:26
> slot6@xxxxxxxxxxxx LINUX      X86_64 Unclaimed Idle      1.000 2682   
> 0+00:00:27
> slot7@xxxxxxxxxxxx LINUX      X86_64 Unclaimed Idle      1.000 2682   
> 0+00:00:28
> slot8@xxxxxxxxxxxx LINUX      X86_64 Unclaimed Idle      1.000 2682   
> 0+00:00:21
> slot9@xxxxxxxxxxxx LINUX      X86_64 Unclaimed Idle      1.000 2682   
> 0+00:00:22
>                      Total Owner Claimed Unclaimed Matched  
> Preempting Backfill
>
>         X86_64/LINUX    12     0       0        12       0           
> 0        0
>
>                Total    12     0       0        12       0           
> 0        0
> labounek@emperor:~$
>
>
>
> Condor_submit comand looked like this:
>
> condor_submit slice_0007.condor
>
> The file contains this text:
>
> Executable = /home/labounek/test/dti.bedpostX/condor_logs/slice_0007.sh
> Universe = vanilla
> output = /home/labounek/test/dti.bedpostX/condor_logs/slice_0007.out
> error = /home/labounek/test/dti.bedpostX/condor_logs/slice_0007.error
> Log   = /home/labounek/test/dti.bedpostX/condor_logs/slice_0007.log
> Queue
>
> The file slice_0007.sh contains one comand:
>
> /usr/share/fsl/5.0/bin/bedpostx_single_slice.sh  
> /home/labounek/test/dti 7 --nf=3 --fudge=1 --bi=1000 --nj=1250  
> --se=25 --model=2 --cnonlinear
>
> I think everything should be ok, but it is stucked. Here is the  
> condor_q output:

Sorry, here it is:

labounek@emperor:~$ condor_q


-- Schedd: emperor.fnol.loc : <172.19.37.11:34081?...
 ID      OWNER            SUBMITTED     RUN_TIME ST PRI SIZE CMD
   1.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0000.sh
   2.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0001.sh
   3.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0002.sh
   4.0   labounek        3/10 19:24   0+00:00:01 H  0   0.0  slice_0003.sh
   5.0   labounek        3/10 19:24   0+00:00:01 H  0   0.0  slice_0004.sh
   6.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0005.sh
   7.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0006.sh
   8.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0007.sh
   9.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0008.sh
  10.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0009.sh
  11.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0010.sh
  12.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0011.sh
  13.0   labounek        3/10 19:24   0+00:00:01 H  0   0.0  slice_0012.sh
  14.0   labounek        3/10 19:24   0+00:00:01 H  0   0.0  slice_0013.sh
  15.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0014.sh
  16.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0015.sh
  17.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0016.sh
  18.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0017.sh
  19.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0018.sh
  20.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0019.sh
  21.0   labounek        3/10 19:24   0+00:00:01 H  0   0.0  slice_0020.sh
  22.0   labounek        3/10 19:24   0+00:00:01 H  0   0.0  slice_0021.sh
  23.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0022.sh
  24.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0023.sh
  25.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0024.sh
  26.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0025.sh
  27.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0026.sh
  28.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0027.sh
  29.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0028.sh
  30.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0029.sh
  31.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0030.sh
  32.0   labounek        3/10 19:24   0+00:00:01 H  0   0.0  slice_0031.sh
  33.0   labounek        3/10 19:24   0+00:00:01 H  0   0.0  slice_0032.sh
  34.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0033.sh
  35.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0034.sh
  36.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0035.sh
  37.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0036.sh
  38.0   labounek        3/10 19:24   0+00:00:00 H  0   0.0  slice_0037.sh
  39.0   labounek        3/10 19:24   0+00:00:01 H  0   0.0  slice_0038.sh
  40.0   labounek        3/10 19:24   0+00:00:01 H  0   0.0  slice_0039.sh

40 jobs; 0 completed, 0 removed, 0 idle, 0 running, 40 held, 0 suspended
labounek@emperor:~$

Regards,
Rene Labounek