Hi,
Try something like this it works for me.
Here is the simple R job submission.
universe = vanilla
Executable = Rscript.sh
requirements = HasR == TRUE
should_transfer_files = YES
when_to_transfer_output = ON_EXIT
arguments = a0
input = a0
log = a0.log
error = a0.error
queue
Rscript.sh
********
#! /bin/sh
export PATH=/u/R/bin:/usr/Grid/R/bin:$PATH
R CMD BATCH --vanilla $1
From:
condor-users-bounces@xxxxxxxxxxx [mailto:condor-users-bounces@xxxxxxxxxxx] On
Behalf Of mathias lambeau
Sent: Wednesday, January 16, 2008 9:21 AM
To: condor-users@xxxxxxxxxxx
Subject: [Condor-users] R & Condor
Bonjour,
I try to run a condor job doing R without success.
I have installed R on several nodes.
My condor job is :
------------------------------------
Universe = vanilla
Executable = /usr/bin/R
Getenv = TRUE
+RJob = TRUE
Arguments = --vanilla --no-readline
Input =
Rate_batch_toy.R
Output = Rate_batch_toy.Rout
Error =
Rate_batch_toy.Rerror
Rank = (Machine == "xxxx.univ-orleans.fr"
|| Machine == "xxxx.univ-orleans.fr"
|| etc... )
Log = foo.log
Notification = always
Queue
--------------------------------------
but it doesnt work.
Have you an idee?
Cordialement,
Mathias Lambeau