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Re: [HTCondor-users] running executable that exists only in the container
- Date: Mon, 2 Oct 2023 17:06:50 +0100
- From: Matthew T West <m.t.west@xxxxxxxxxxxx>
- Subject: Re: [HTCondor-users] running executable that exists only in the container
Hi Greg,
One step forward. Got rid of that particular shadow exception.
040 (008.000.000) 2023-10-02 17:01:17 Started transferring input files
ÂÂÂÂÂÂÂ Transferring to host:
<127.0.0.1:9618?addrs=127.0.0.1-9618&alias=minicondor&noUDP&sock=slot1_1449_b394_6627>
...
040 (008.000.000) 2023-10-02 17:01:17 Finished transferring input files
...
001 (008.000.000) 2023-10-02 17:01:18 Job executing on host:
<127.0.0.1:9618?addrs=127.0.0.1-9618&alias=minicondor&noUDP&sock=startd_989_f341>
ÂÂÂÂÂÂÂ SlotName: slot1@minicondor
ÂÂÂÂÂÂÂ CondorScratchDir = "/var/lib/condor/execute/dir_219876"
ÂÂÂÂÂÂÂ Cpus = 1
ÂÂÂÂÂÂÂ Disk = 12381279
ÂÂÂÂÂÂÂ Memory = 1918
...
007 (008.000.000) 2023-10-02 17:01:18 Shadow exception!
ÂÂÂÂÂÂÂ Error from slot1@minicondor: Singularity test failed:No
Singularity tests for contained app:
ÂÂÂÂÂÂÂ 0Â -Â Run Bytes Sent By Job
ÂÂÂÂÂÂÂ 83791872Â -Â Run Bytes Received By Job
What sort of Singularity tests should be running along with the
executable itself?
Matt
Matthew T. West
DevOps & HPC SysAdmin
University of Exeter, Research IT
http://www.exeter.ac.uk/research/researchcomputing/support/researchit
57 Laver Building, North Park Road, Exeter, EX4 4QE, United Kingdom
On 02/10/2023 16:53, Greg Thain via HTCondor-users wrote:
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On 10/2/23 08:37, Matthew T West via HTCondor-users wrote:
Hi Greg,
First, thanks for noting this flag! I figured there had to be
something like it.
The submit file is below:
universeÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂ = container
container_imageÂÂÂÂÂÂÂÂ = ./lolcow_latest.sif
transfer_executableÂÂÂ = false
executableÂÂÂÂÂ = cowsay
argumentsÂÂÂÂÂ = moo
outputÂÂÂÂÂÂÂÂÂÂÂÂ = job.out
errorÂÂÂÂÂÂÂÂÂÂÂÂÂÂ = job.err
logÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂÂ = job.log
request_cpusÂÂ = 1
request_memory = 1024M
request_diskÂÂ = 1024M
Try forcing file transfer on, by setting
should_transfer_files = yes
when_to_transfer_out = on_exit
and see if that work.
-greg
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