[HTCondor-users] Running FMRIPrep/FreeSurfer on HTCondor

[Sara Heyn <sheyn@xxxxxxxx>]

Hi all –

 

Hoping (assuming) I am not the first researcher to run FMRIPrep on HTCondor. I have two hopefully easy questions for anyone that may have done this before: 

 

• I am trying to just use fMRIPrep through the docker image. According to the online tutorial, I have included the following in my submit file:
• universe = docker
• docker_image = sheyn/fmriprep:latest
• But I am getting the following error (when I run the submit file interactively)
• Job is held: "Error from slot1_2@xxxxxxxxxxxxxxxxxxxxxxxxxxxxx: Unable to find image 'sheyn/fmriprep:latest' locally Error response from daemon: pull access denied for sheyn/fmriprep, repository does not exist or may require 'docker login': denied: requested access to the resource is denied ".
• Any thoughts? Am I using the wrong tags?

 

• Next, the fmriprep-docker command also wants me to give it the path the FreeSurfer license file. Anyone know where FreeSurfer is stored?
• A couple of years ago I used FreeSurfer from the /gluster directory, but I am not sure that still exists anymore. Any help would be appreciated!

 

Thanks, everyone!

Sara

 

 

 

 

	Sara Heyn, J.D., Ph.D. Pronouns: she/her/hers
	Scientist I, BRAVE Research Center UW-Madison Department of Psychiatry 6001 Research Park Blvd. Madison, WI 53719 sheyn@xxxxxxxx