Re: [HTCondor-users] [EXTERNAL] Re: Sample R jobs on Windows

["Scheel, Stephen" <scheel@xxxxxxxxxxxxx>]

Richie,

 

Thank you very much for this and the quick reply â this is quite a bit to dissect.  I have some research to do regarding the âDocker Universeâ that you mentioned here. 

 

Again,

 

Thank you!

 

From: HTCondor-users <htcondor-users-bounces@xxxxxxxxxxx> On Behalf Of Richard Erickson via HTCondor-users
Sent: Wednesday, September 18, 2019 3:35 PM
To: HTCondor-Users Mail List <htcondor-users@xxxxxxxxxxx>
Cc: Richard Erickson <rerickson@xxxxxxxx>
Subject: Re: [HTCondor-users] [EXTERNAL] Re: Sample R jobs on Windows

 

Steve,

 

Please see my examples, note the usgs bit bucket git repo will be moving to code.usgs.gov sometime this fall

https://my.usgs.gov/bitbucket/projects/CDI/repos/hunting_invasive_species_with_htcondor/browse

 

And open access tutorial

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006468

 More generally, I find the Docker universe to be better for running r jobs.  But, I do have an example for native windows 

 

Here are other example projects

https://github.com/rerickson-usgs/edna-sampling-design

https://my.usgs.gov/bitbucket/projects/UMESC/repos/ltrm-trend_comparison/browse/EricksonAccesses/CondorFiles

 

The last one is 4 yrs old, but uses windows batch files.

 

Richie

 

 

 

 

On Sep 18, 2019, at 3:07 PM, Scheel, Stephen <scheel@xxxxxxxxxxxxx> wrote:

Good morning

We are trying to get our HTCondor cluster to be usable for R job submissions.  Our central manager worker and submission nodes are windows based machines.  All of the worker nodes have R installed in the default paths.  We are trying to get some basic R jobs submitted as a proof of concept here but no one really knows how to use actually package, and submit jobs.  I have successfully and tested the generic sleep.sub job and can submit many jobs with this.  What we would like is to have a sample R job that we can dissect and reverse engineer to start our submissions.

 

Any assistance would be very much appreciated.

 

Thanks,

 

Steve

 

Stephen Scheel // Network Manager

 

Miami Business School

5250 University Drive, Jenkins Bldg 211D

Coral Gables, FL 33146

email: scheel@xxxxxxxxxxxxx
office: 305-284-5449
fax: 305-284-9284

 

 

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