Re: [HTCondor-users] [EXTERNAL] Docker Universe and Local scripts

["Erickson, Richard" <rerickson@xxxxxxxx>]

I don't have time to look at your specific example, but I've published some Docker examples on a git repo:

https://my.usgs.gov/bitbucket/projects/CDI/repos/hunting_invasive_species_with_htcondor/browse

As well a recent tutorial article:

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006468

Depending upon how lost you are, these might be good starting points.Â

On Mon, Oct 29, 2018 at 3:38 PM Brandon Graves <bmgraves@xxxxxx> wrote:

Hi All,

I'm running some early tests with docker universe to see if its viable to suggest to my users, and I'm running into some trouble. If I work off of command that are strictly in the image itself everything is fine, but if the "executable" is set to a local script, the job is held with the following:

"Hold reason: Error from slot1_1@xxxxxxxxxxxxxxxxx: Error running docker job: OCI runtime create failed: container_linux.go:348: starting container process caused 'exec: \'./condor_exec.exe\': stat ./condor_exec.exe: no such file or directory': unknown"

I'm using the following submit file:
>universeÂÂÂÂÂÂÂ = docker
>ExecutableÂÂÂÂÂ = ./dockertest.sh
>docker_imageÂÂÂ = debian
>LogÂÂÂÂÂÂÂÂÂÂÂÂ = test.log
>OutputÂÂÂÂÂÂÂÂÂ = test.out
>ErrorÂÂÂÂÂÂÂÂÂÂ = test.error
>request_memory = 512
>Queue

ÂI have tried adding:
>transfer_executable = True

or (based on: https://research.cs.wisc.edu/htcondor/HTCondorWeek2015/presentations/ThainG_Docker.pdf)
> transfer_input_files = dockertest.sh

or

>input_files = dockertest.sh

I'm sure this is probably something i'm being dumb about, but I'm not overly experienced with using docker so I'm feeling a bit lost. If it ends up being important dockertest.sh is just a simple bash script that runs "echo 'this worked'"

any help would be appreciated.

--bmgraves

--

************ Richard Erickson, PhD 
   O__  ---- Research QuantitativeÂEcologist           
  c/ /'_ --- Upper Midwest Environmental Sciences Center  
 (*) \(*) -- US Geological Survey 
~~~~~~~~~~ - La Crosse, WI 54603