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did the job go on hold?
was there an error message in the .log file?
was there anything in the .log file?
Â
There is no statement in your submit file telling it to transfer the shower_test.sh file. This is ok if you have a shared file system
between the submit machine and execute machine, but not if you donât.ÂÂ Missing statements about file transfer may also be why
you arenât getting any output files â because you havenât told condor to transfer them back.
Â
try adding
Â
should_transfer_files = yes
transfer_input_files = $(script_to_run)
when_to_transfer_output = ON_EXIT
Â
to your submit file.
-tj
From: HTCondor-users [mailto:htcondor-users-
bounces@xxxxxxxxxxx ] On Behalf Of MICHELE GROSSI
Sent: Monday, January 8, 2018 11:13 AM
To: HTCondor-Users Mail List <htcondor-users@xxxxxxxxxxx>
Subject: Re: [HTCondor-users] PROBLEM Submitting CONDOR JOB WITH BASH SCRIPTÂ
Sorry for being misleading.
I mean that the submission works bit the job run is short and in fact I got no output. It seems that the bash script inside did not start.
MG
saluti,
MicheleÂ
Il 08 gen 2018 6:04 PM, "John M Knoeller" <johnkn@xxxxxxxxxxx> ha scritto:
We donât understand what you mean when you say âSUBMISSION WORKS BUT IT DOES NOT WORKâ
Â
you need to be more specific.ÂÂ
Â
Does condor_submit succeed or fail?
If it fails, what is the error message
If it succeeds, what is it that is failing?
Â
-tj
Â
From: HTCondor-users [mailto:htcondor-users-
bounces@xxxxxxxxxxx ] On Behalf Of MICHELE GROSSI
Sent: Friday, January 5, 2018 4:02 PM
To: htcondor-users@xxxxxxxxxxx
Subject: [HTCondor-users] PROBLEM Submitting CONDOR JOB WITH BASH SCRIPTÂ
Hello, I would ask your help in understanding how to submit a job to condor like what I'm trying to explain.
FIRST PART
I have a bash script (for sake of simplicity I removed my internal path folder and I used a fancy one, consider that the shell script and the program works fine local) that using shell command, loop through a folder and extract some files parsing the name. Once scouting the name I need, I use that to execute another program.
Then I need to execute a program (SECOND PART) that can be run in terminal typing the row you see starting with ./
#!/bin/bash
cp -r /myfolder/lastfolder .
cd last folder
source config.sh
for i in $( ls /myfolder/lastfolder/gen*$1/data.dat ); do
gen=$(echo $i)
percorso=`echo $gen | cut -d'/' -f9- `
singlegen_old=`echo $gen | cut -d'/' -f9-| sed -e 's/\/data.dat//g' `
singlegen=`echo $percorso | sed -e 's/\/data.dat//g' `
number=`echo $singlegen | sed -e 's/gen//g' `
./main.exe firstargument.cmnd $i thirdargument_$number.dat
doneThe submit condor is the following:
# begin Condor submit file
# actual job is performed by the shell script
script_to_run = shower_test.sh
Arguments = $(script_to_run)
Executable = /bin/bash
Output = $(script_to_run).$(cluster).$(process).out
Error = $(script_to_run).$(cluster).$(process).err
Log = $(script_to_run).log
Queue 1
# end Condor submit fileThe CONDOR SUBMISSION WORKS BUT IT DOES NOT WORK.
THANK YOU
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