Re: [HTCondor-users] HTCondor + docker + opengate

[Greg Thain <gthain@xxxxxxxxxxx>]

On 08/28/2018 12:25 PM, Ben Pietras wrote:

Hi all,

Probably quite an easy one.

I'm looking to run the docker image 'opengatecollaboration/gate' through condor. Condor works fine with gate for non-docker jobs.

My condor.txt:
universe       = docker
docker_image = opengatecollaboration/gate
should_transfer_files = YES
when_to_transfer_output = ON_EXIT
output                  = out.$(Process)
error                   = err.$(Process)
log                     = log.$(Process)
queue 1

Condor 8.6.12
Docker 1.13.1
Machines running CentOS 7.

The logs show:
/gate/gate_v8.1.p01-install/bin/Gate: error while loading shared libraries: libG4Tree.so: cannot open shared object file: No such file or directory

This is because the environmental variables aren't set with geant4.sh (in the container, path /geant4/geant4.10.04.p02-install/bin/geant4.sh)

Would something like

universe       = docker
docker_image = opengatecollaboration/gate
executable = /geant4/geant4.10.04.p02-install/bin/geant4.sh
argumnents = what ever arguments are needed
should_transfer_files = YES
when_to_transfer_output = ON_EXIT
output                  = out.$(Process)
error                   = err.$(Process)
log                     = log.$(Process)
queue 1

do the trick?

-greg