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labounek@emperor:~$ condor_q -- Schedd: emperor.fnol.loc : <172.19.37.11:34081?... ID OWNER SUBMITTED RUN_TIME ST PRI SIZE CMD 1.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0000.sh 2.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0001.sh 3.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0002.sh 4.0 labounek 3/10 19:24 0+00:00:01 H 0 0.0 slice_0003.sh 5.0 labounek 3/10 19:24 0+00:00:01 H 0 0.0 slice_0004.sh 6.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0005.sh 7.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0006.sh 8.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0007.sh 9.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0008.sh 10.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0009.sh 11.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0010.sh 12.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0011.sh 13.0 labounek 3/10 19:24 0+00:00:01 H 0 0.0 slice_0012.sh 14.0 labounek 3/10 19:24 0+00:00:01 H 0 0.0 slice_0013.sh 15.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0014.sh 16.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0015.sh 17.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0016.sh 18.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0017.sh 19.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0018.sh 20.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0019.sh 21.0 labounek 3/10 19:24 0+00:00:01 H 0 0.0 slice_0020.sh 22.0 labounek 3/10 19:24 0+00:00:01 H 0 0.0 slice_0021.sh 23.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0022.sh 24.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0023.sh 25.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0024.sh 26.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0025.sh 27.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0026.sh 28.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0027.sh 29.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0028.sh 30.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0029.sh 31.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0030.sh 32.0 labounek 3/10 19:24 0+00:00:01 H 0 0.0 slice_0031.sh 33.0 labounek 3/10 19:24 0+00:00:01 H 0 0.0 slice_0032.sh 34.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0033.sh 35.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0034.sh 36.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0035.sh 37.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0036.sh 38.0 labounek 3/10 19:24 0+00:00:00 H 0 0.0 slice_0037.sh 39.0 labounek 3/10 19:24 0+00:00:01 H 0 0.0 slice_0038.sh 40.0 labounek 3/10 19:24 0+00:00:01 H 0 0.0 slice_0039.sh 40 jobs; 0 completed, 0 removed, 0 idle, 0 running, 40 held, 0 suspended labounek@emperor:~$ Execute bit set for my id? Do you think this? I think I have it at boths. labounek@emperor:~/test/dti.bedpostX/condor_logs$ ls -l slice_0007.sh -rwxrwx--- 1 labounek mri 142 Mar 10 19:24 slice_0007.sh labounek@emperor:~/test/dti.bedpostX/condor_logs$ labounek@emperor:~$ ls -l /usr/share/fsl/5.0/bin/bedpostx_single_slice.sh-rwxr-xr-x 1 root root 3806 Oct 2 17:52 /usr/share/fsl/5.0/bin/bedpostx_single_slice.sh
labounek@emperor:~$ Regards, Rene Cituji Bob Ball <ball@xxxxxxxxx>:
No condor_q output was included.Make sure that both slice_0007.sh and bedpostx_single_slice.sh have their execute bit set for your id. If this is the case then do "condor_q -analyze" on the stuck job.bob On 3/10/2016 1:45 PM, Labounek Renà wrote:Dear condor users,I have submitted jobs but they are still held and not running. Condor_status looks ok:labounek@emperor:~$ condor_statusName OpSys Arch State Activity LoadAv Mem ActvtyTimeslot10@xxxxxxxxxxx LINUX X86_64 Unclaimed Idle 1.000 2682 0+00:00:23 slot11@xxxxxxxxxxx LINUX X86_64 Unclaimed Idle 1.000 2682 0+00:00:24 slot12@xxxxxxxxxxx LINUX X86_64 Unclaimed Idle 6.320 2682 0+00:00:25 slot1@xxxxxxxxxxxx LINUX X86_64 Unclaimed Idle 1.000 2682 0+00:00:04 slot2@xxxxxxxxxxxx LINUX X86_64 Unclaimed Idle 1.000 2682 0+00:00:23 slot3@xxxxxxxxxxxx LINUX X86_64 Unclaimed Idle 1.000 2682 0+00:00:24 slot4@xxxxxxxxxxxx LINUX X86_64 Unclaimed Idle 1.000 2682 0+00:00:25 slot5@xxxxxxxxxxxx LINUX X86_64 Unclaimed Idle 1.000 2682 0+00:00:26 slot6@xxxxxxxxxxxx LINUX X86_64 Unclaimed Idle 1.000 2682 0+00:00:27 slot7@xxxxxxxxxxxx LINUX X86_64 Unclaimed Idle 1.000 2682 0+00:00:28 slot8@xxxxxxxxxxxx LINUX X86_64 Unclaimed Idle 1.000 2682 0+00:00:21 slot9@xxxxxxxxxxxx LINUX X86_64 Unclaimed Idle 1.000 2682 0+00:00:22 Total Owner Claimed Unclaimed Matched Preempting BackfillX86_64/LINUX 12 0 0 12 0 0 0 Total 12 0 0 12 0 0 0 labounek@emperor:~$ Condor_submit comand looked like this: condor_submit slice_0007.condor The file contains this text: Executable = /home/labounek/test/dti.bedpostX/condor_logs/slice_0007.sh Universe = vanilla output = /home/labounek/test/dti.bedpostX/condor_logs/slice_0007.out error = /home/labounek/test/dti.bedpostX/condor_logs/slice_0007.error Log = /home/labounek/test/dti.bedpostX/condor_logs/slice_0007.log Queue The file slice_0007.sh contains one comand:/usr/share/fsl/5.0/bin/bedpostx_single_slice.sh /home/labounek/test/dti 7 --nf=3 --fudge=1 --bi=1000 --nj=1250 --se=25 --model=2 --cnonlinearI think everything should be ok, but it is stucked. Here is the condor_q output:_______________________________________________ HTCondor-users mailing list To unsubscribe, send a message to htcondor-users-request@xxxxxxxxxxx with a subject: Unsubscribe You can also unsubscribe by visiting https://lists.cs.wisc.edu/mailman/listinfo/htcondor-users The archives can be found at: https://lists.cs.wisc.edu/archive/htcondor-users/_______________________________________________ HTCondor-users mailing list To unsubscribe, send a message to htcondor-users-request@xxxxxxxxxxx with a subject: Unsubscribe You can also unsubscribe by visiting https://lists.cs.wisc.edu/mailman/listinfo/htcondor-users The archives can be found at: https://lists.cs.wisc.edu/archive/htcondor-users/