Hi all i submitted 29 jobs using condor_submit and using freesurfer recon-all command, after a while (20 minutes) most of them were rejected but without any error message. i displayed the recon-all.error contained in .../scripts directory and here is what was in : SUBJECT tcpr8 DATE Sat May 25 13:49:31 CEST 2013 USER mlaouche HOST cn07 PROCESSOR x86_64 OS Linux Linux cn07 2.6.32-358.2.1.el6.x86_64 #1 SMP Wed Mar 13 00:26:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux $Id: recon-all,v 1.379.2.17 2011/05/20 22:48:18 nicks Exp $ /usr/local/condor/hosts/cn07/execute/dir_10585/condor_exec.exe PWD /home_cluster/mlaouche/freesurf_makh/tcpr8 CMD cp /home_cluster/mlaouche/freesurf_makh/tcpr8/mri/orig/001.mgz /home_cluster/mlaouche/freesurf_makh/tcpr8/mri/rawavg.mgz and here is what was displayed when using condor_q : 34.4 mlaouche 5/25 13:47 0+00:18:02 R 0 1220.7 recon-all 34.5 mlaouche 5/25 13:47 0+00:18:02 R 0 1220.7 recon-all 34.10 mlaouche 5/25 13:47 0+00:18:02 R 0 1220.7 recon-all 34.11 mlaouche 5/25 13:47 0+00:18:02 R 0 1220.7 recon-all 34.13 mlaouche 5/25 13:47 0+00:18:01 R 0 1220.7 recon-all 34.14 mlaouche 5/25 13:47 0+00:18:02 R 0 1220.7 recon-all 34.15 mlaouche 5/25 13:47 0+00:18:02 R 0 1220.7 recon-all 34.17 mlaouche 5/25 13:47 0+00:18:01 R 0 1220.7 recon-all 34.21 mlaouche 5/25 13:47 0+00:18:02 R 0 1220.7 recon-all 34.23 mlaouche 5/25 13:47 0+00:18:01 R 0 1220.7 recon-all 10 jobs; 0 completed, 0 removed, 0 idle, 21 running, 0 held, 0 suspended thanks for help |