[HTCondor-users] Newbie questions about submit

[leconte <jerome.leconte@xxxxxxxxxxxxxxx>]

hello,

 I'm new to Condor use.

 I try example and make somme code  to explore condor "helloworld" and 
onther :)  I try ... vanilla universe and MPI.

 all work perfectly ... now I want to make more usefull thing.

 But I have a problem ... I can run a MPI run with mpirun without 
problem my CLI was like this.

mpirun clustalw-mpi -infile=dataset_11.dat -outfile=galaxy_dataset_46.dat -OUTORDER=ALIGNED -SEQNOS=OFF -TYPE=DNA



I began to write my submit_file to play with condor_submit command  but 
I don't know where I put my arguments "-OUTORDER=ALIGNED -SEQNOS=OFF 
-TYPE=DNA "

I try these submit_file without success



universe                = parallel
executable              = openmpiscript
arguments               = /usr/bin/clustalw-mpi
Getenv                  = True
machine_count           = 4
transfer_input_files    = 
/home/galaxy/galaxy-dist/database/files/000/dataset_11.dat
should_transfer_files   = yes
when_to_transfer_output = on_exit
Log                     = logs/mpi_$(Process).log
Output                  = logs/mpi_$(Process).out
Error                   = logs/mpi_$(Process).error
notification            = never
queue


And this one

universe = MPI
executable=/usr/bin/clustalw-mpi
# only with grid and vanilla
#transfert_executable=True
log = logfile
arguments = -OUTORDER=ALIGNED -SEQNOS=OFF -TYPE=DNA
#input = logs/hooinfile.$(NODE)
input = /home/galaxy/galaxy-dist/database/files/000/dataset_11.dat
output = logs/hoooutfile.$(NODE)
error = logs/hooerrfile.$(NODE)
machine_count = 4
should_transfer_files = yes
when_to_transfer_output = on_exit
queue


And this ... do nothing :( ....

Some advices ?

greetings