On Mar 1, 2013, at 5:00 AM, Guillermo Marco Puche <guillermo.marco@xxxxxxxxxxxxxxxxxxxxx> wrote:
I've been trying Bosco lately and seems to work pretty well for me to submit to another lan cluster SGE cluster.
For example:
$ condor_q
-- Submitter: brugal : <192.168.6.2:11000?sock=3072_dcd9_3> : brugal
ID OWNER SUBMITTED RUN_TIME ST PRI SIZE CMD
62.0 gmarco 3/1 04:43 0+00:14:32 R 0 0.0 bwa.sh
I was then trying to achieve the same but with my local Condor installation and not with condor pool inside Bosco. I'm having no success when trying to submit exactly the same condor job file:
As root i start condor with "condor_master".
ps -ef | grep condor
condor 3850 1 0 05:05 ? 00:00:00 condor_master
condor 3851 3850 0 05:05 ? 00:00:00 condor_collector -f
condor 3853 3850 0 05:05 ? 00:00:00 condor_negotiator -f
condor 3854 3850 0 05:05 ? 00:00:00 condor_schedd -f
condor 3855 3850 0 05:05 ? 00:00:00 condor_startd -f
root 3856 3854 0 05:05 ? 00:00:00 condor_procd -A /var/run/condor/procd_pipe.SCHEDD -L /var/log/condor/ProcLog.SCHEDD -R 10000000 -S 60 -C 498
condor 3907 3855 87 05:05 ? 00:00:03 mips
root 3924 3758 0 05:05 pts/0 00:00:00 grep condor
I try to submit my job and holds on Idle state forever, with Bosco I don't have that problem:
condor_q
-- Submitter: brugal : <192.168.6.2:41257> : brugal
ID OWNER SUBMITTED RUN_TIME ST PRI SIZE CMD
26.0 gmarco 3/1 05:07 0+00:00:00 I 0 0.0 bwa.sh
That's my job file:
universe = grid
grid_resource = batch sge gmarco@cacique
executable = bwa.sh
output = bwa.out
error = bwa.err
log = bwa.log
should_transfer_files = YES
transfer_output = true
stream_output = true
when_to_transfer_output = ON_EXIT_OR_EVICT
queue
Submitting jobs to a remote cluster using a regular installation of HTCondor requires some manual configuration steps, which we don't have documented currently. This is one of the advantages of Bosco. Over time, we may make this kind of job submission easier to do with a regular HTCondor installation.
Thanks and regards,
Jaime Frey
UW-Madison HTCondor Project
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