Hi i am an FSL user and i submitted 36 jobs using the flirt/fsl command to condor using the following script : Universe = vanilla Requirements = Arch =="X86_64" ShouldTransferFiles = ALWAYS Priority = 0 Executable = /home_cluster/amesse/software/fsl5_x64/bin/flirt Output = .job_flirt-$(process).out Error = .job_flirt-$(process).err Log = .job_flirt-$(process).log Getenv = True Arguments = "-in ~/ctr$(process)/ctr$(process)_FA.nii.gz -ref ~/ctr$(process)_brain.nii.gz -omat ~/ctr$(process)/dti50.bedpostX/xfms/diff2str.mat -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -dof 12 -cost corratio -usesqform " Queue 13 Arguments = "~/gd$(process)/gd$(process)_FA.nii.gz -ref ~/gd$(process)_brain.nii.gz -omat ~/gd$(process)/dti50.bedpostX/xfms/diff2str.mat -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -dof 12 -cost corratio -usesqform" Queue 14 Arguments = "-in ~/tcpr$(process)/tcpr$(process)_FA.nii.gz -ref ~/tcpr$(process)_brain.nii.gz -omat ~/tcpr$(process)/dti50.bedpostX/xfms/diff2str.mat -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -dof 12 -cost corratio -usesqform" Queue 9 which means that i have 13 control subjects, 14 class1 patients and 9 class2 patients. i noticed the indiex "process" is not initialised ater the 13 first subjects. can i for example put it to zerro after queue 13 and queue 14 ? Thanks |