Re: [Condor-users] condor jobs goes to idle for

[Raman Sehgal <sc.ramansehgal@xxxxxxxxx>]

Hello Sunil,
You are very  close to get your job execute.

by mistake i think you have sourced root binary, 
its not what you have to source.

First of all in you have to do one small change in ROOT configuration file
which is inside bin folder and the name of file is thisroot.sh

Open this file and modify the line number 15 and in your case
line 15 should  be 

    if [ ! -f /export/root/bin/thisroot.sh ]; then

after that save that file and close it.

now coming to you batch job, now it should be like this

#!/bin/sh

source /export/root/bin/thisroot.sh

root -l rand2.C -q

After doing all this, when you submit the job then 
you should not get your previous error.

whatever is there let me know.


cheers,

On Sat, Feb 4, 2012 at 3:01 PM, Dr. Sunil M. Dogra <smdogra@xxxxxxxxx> wrote:

Hi, 

My path to root is

 /export/root/bin/root

So I changed but I still get the error 

#!/bin/sh

source /export/root/bin/root

root -l rand2.C -q

/export/sunil/condor2/batch_job.sh: line 2: source: /export/root/bin/root: cannot execute binary file

/export/sunil/condor2/batch_job.sh: line 2: source: /export/root/bin/root: cannot execute binary file

/export/sunil/condor2/batch_job.sh: line 3: root: command not found

/export/sunil/condor2/batch_job.sh: line 3: root: command not found

With Regards

sunil

On Sat, Feb 4, 2012 at 12:00 PM, Raman Sehgal <sc.ramansehgal@xxxxxxxxx> wrote:

Hello Sunil, 

that /bin/hostname is system command, thats why it executes

interactive as well as using condor.

but ROOT is not the system command, thats what i have mentioned in 

my previous mail that you have to source root path, then the execute machine

will get the root envirorment, and it will execute the root macro.

But it needs that ROOT must be installed in all the machines at same location

then only the thing will work.

Hope it will solve your problem, 

Whatever is the results please let me know.

cheers,

On Sat, Feb 4, 2012 at 11:28 AM, Dr. Sunil M. Dogra <smdogra@xxxxxxxxx> wrote:

Thank you.

I changed my batch_job.sh fie accordingly.

///////////////////

#!/bin/sh                                                                                                                       

root -l rand2.C -q

////////////////////////

if I run this file it runs and give the output but when I submit the condor job its says

/export/sunil/condor2/batch_job.sh: line 3: root: command not found

Also if  change the batch_job.sh file

#!/bin/sh                                                                                                                       

/bin/hostname

It run both ways interactive as well as condor jobs

Any suggestions ???

regards

sunil

On Sat, Feb 4, 2012 at 12:18 AM, Raman Sehgal <sc.ramansehgal@xxxxxxxxx> wrote:

congrates that your thing starts working.

Now coming to your problem, 

This prob. arise because of two reasons,

first you have not specified shell interpreter at the first line of 

script, so suggest you to add #!/bin/sh as your first line in your

batch_job.sh script.

second your execute machine should get the ROOT environment,

so in the starting of script source root environment

i dont know in your case where is ROOT installed

it should be like this,

source <path_to_root>

So your batch file should look like this

#!/bin/sh

source <path_to_root>

root -l ran3.C -q 

After this your jobs should execute,

provided all the directory permissions are correct.

I suggest that before running this, try to run a simple

shell script which just echo some message.

cheeers,

On Fri, Feb 3, 2012 at 6:17 PM, Dr. Sunil M. Dogra <smdogra@xxxxxxxxx> wrote:

Thank you for response.

I restart the condor service and it worked

But I still have few questions 

I am running follow script to run my jobs 

==========

#!/bin/sh -f

Universe        = vanilla

Initialdir      = /export/sunil/condor_test1

Executable      =  batch_job.sh

Output          = /export/sunil/err/outjob.out.$(Process)

Error           = /export/sunil/err/errjob.err

Log             = /export/sunil/err/log.job.log.$(Process)

Queue 10

==========

Also my executable file is  batch_job.sh following line

 

root -l ran3.C -q

But gives error and goes to held state.

Failed to execute '/export/sunil/condor2/batch_job.sh': (errno=8: 'Exec format error')   Code 6 Subcode 8

Any idea why this is happening

with Best Regards

sunil

On Fri, Feb 3, 2012 at 5:54 PM, Raman Sehgal <sc.ramansehgal@xxxxxxxxx> wrote:

Hello Sunil,
    First of all regarding your message after condor_q/condor_status
You can safely ignore this message, it has nothing to do with your job.

Now coming to your job state,
  First i want to know whether your job goes in running state or not, may be
after a long,
If it does not go to running state that means either the jobs requirements does match
machine classAds. or you have not configured your execute machine to execute the jobs.

Only after knowing these details we can go ahead.




cheers,

On Fri, Feb 3, 2012 at 5:26 PM, Dr. Sunil M. Dogra <smdogra@xxxxxxxxx> wrote:

Hi, 

I have a small  condor cluster running condor-7.7.4-1.x86_64 

When I submit jobs it goes stay for idle state and never runs. Also I got the following message after condor_q/condor_status

condor_q: /afs/cern.ch/project/gd/LCG-share/3.2.8-0/globus/lib/libglobus_gssapi_gsi_gcc64dbg.so.0: no version information available (required by /usr/lib64/condor/libcondor_utils.so)

Any idea why my jobs, what is happening ?

Thank you

With Best Regards

sunil

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