[Condor-users] Condor & Galaxy pointers?

["Steven Platt" <Steven.Platt@xxxxxxxxxx>]

Title: Condor & Galaxy pointers?

Hi everyone,

We are starting to look at the Galaxy delivery interface (https://bitbucket.org/galaxy/galaxy-central/wiki/Home). Their documentation says that it can interact with a cluster setup, but only quotes success on TORQUE PBS, SGE & LSF (https://bitbucket.org/galaxy/galaxy-central/wiki/Config/Cluster). There’s also mention that “it should work with any distributed resource manager (DRM) which implements the DRMAA”

We have a small condor cluster (48 non-dynamic slots all running under v 7.0.5) and I’m wondering if anyone who has successfully got Galaxy running on their cluster would care to share on setup & job execution. I realise that the first piece of advice might be to upgrade to condor, but apart from that …

TIA

Steve

Dr Steven Platt

Bioinformatician

Applied Laboratory- and Bio Informatics

Health Protection Agency

London

www.hpa.org.uk/bioinformatics

---

************************************************************************** The information contained in the EMail and any attachments is confidential and intended solely and for the attention and use of the named addressee(s). It may not be disclosed to any other person without the express authority of the HPA, or the intended recipient, or both. If you are not the intended recipient, you must not disclose, copy, distribute or retain this message or any part of it. This footnote also confirms that this EMail has been swept for computer viruses, but please re-sweep any attachments before opening or saving. HTTP://www.HPA.org.uk **************************************************************************