Re: [Condor-users] bash script

[LAOUCHEDI MAKHLOUF <laoumakhl@xxxxxxxx>]

hi Edier
             the file content is (a freesurfer command) :
#!/bin/sh
i=1
j=1
k=1
for l in /home/mlaouche/database/tcpr/tcpr*
do
recon-all -i database/tcpr/tcpr$((i++))/t1_3d/tcpr$((j++)).nii.gz  -subjid tcpr$((k++))
done

and there is 27 datasets named tcpr1.niingz ...tcpr27.nii.gz

thank you
--- En date de : Mar 27.12.11, Edier Zapata <edalzap@xxxxxxxxx> a écrit :

De: Edier Zapata <edalzap@xxxxxxxxx>
Objet: Re: [Condor-users] bash script
À: "Condor-Users Mail List" <condor-users@xxxxxxxxxxx>
Date: Mardi 27 décembre 2011, 17h27

Hi Lauoched,
you are only submitting 1 job (the Queue line mean how many jobs).

What exactly you are trying to do?

Bye
On 12/27/11, LAOUCHEDI MAKHLOUF <laoumakhl@xxxxxxxx> wrote:
> hi everyone
>                   i wrote a for loop shell script and i submitted it to
> condor, with changing the excutable and arguments (for the executable i put
> "/bin/bash" instead of "for" and for the argument i put "myfile.sh" like
> advised by Dimitri Maziuk), and it worked well but it works only on one nod
> (when i check with condor_q only one job is generated and running)
>
> the content of my .job.submit file after modification :
>
> Universe    = vanilla
> Requirements    = Arch =="X86_64"
> Priority    = 0
> Executable    = /bin/sh
> Output        = .MC_recon_all_tout_gd.sh.job.out
> Error        = .MC_recon_all_tout_gd.sh.job.err
> Log        = .MC_recon_all_tout_gd.sh.job.log
> Getenv        = True
> Arguments    = "MC_recon_all_tout_gd.sh"
> Queue
>
>
> thanks for help
>


--
Edier Alberto Zapata Hernández
Ingeniero de Sistemas
Universidad de Valle
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