Re: [Condor-users] Run Jobs in two architectures

[Edier Alberto Zapata Hernández <edalzap@xxxxxxxxx>]

Thanks Alex,

 Maybe I was not clear, I want that the same task run in both architectures at the same time, I mean, I submit the next submitFile from the submit node (and X86_64 machine):

## submitFile##

Universe = Vanilla
should_transfer_files = YES
when_to_transfer_output = ON_EXIT_OR_EVICT
transfer_input_files = est2genome.pl

transfer_executable = False
Executable = /opt/test/bin/exonerate

 

Arguments = --model est2genome --bestn 1 --query 001_seqs --target /home/condor/Manihot_v1.n50.merMasked.repeat.masked.fa
Input = 001_seqs
Log = Log-001_seqs.txt
Error = Err-001_seqs.txt
Output = Out-001_seqs.txt
=?= 0
Queue

Arguments = --model est2genome --bestn 1 --query 002_seqs --target /home/condor/Manihot_v1.n50.merMasked.repeat.masked.fa
Input = 002_seqs
Log = Log-002_seqs.txt
Error = Err-002_seqs.txt
Output = Out-002_seqs.txt
=?= 0
Queue

...

Arguments = --model est2genome --bestn 1 --query 999_seqs --target /home/condor/Manihot_v1.n50.merMasked.repeat.masked.fa
Input = 999_seqs
Log = Log-999_seqs.txt
Error = Err-999_seqs.txt
Output = Out-999_seqs.txt
=?= 0
Queue
##############

To the cluster, Condor will add Arch="X86_64", OpSys=LINUX, so the jobs will run only in the X86_64 nodex, and the PCs working at 32bits (Arch=INTEL) will be ommited. That's what I don't want, I want that the PCs process the jobs too.

 

Thank you.

On Thu, Oct 14, 2010 at 9:39 AM, Alas, Alex [FEDI] <aalas@xxxxxxxxxxxxx> wrote:

Edier,

In your case I would start tracing the cause, do a condor_q –better-analyze and see what’s coming up. If the allocation is failing for a reason, this command can give you a good idea where the problem lies.

Alex

 

From: condor-users-bounces@xxxxxxxxxxx [mailto:condor-users-bounces@xxxxxxxxxxx] On Behalf Of Edier Alberto Zapata Hernández
Sent: Thursday, October 14, 2010 9:25 AM
To: condor-users
Subject: [Condor-users] Run Jobs in two architectures

 

Good morning

 

 I have a heterogeneous cluster with condor:

 2 DualQuadCore Servers (X86_64)

 3 PCs (x86)
All of them are Execute, I have the same programs installed on them and I want that when I submit a job it runs in all of them (But condor "require" same architecture in the submit and execute nodes), I'd disable the transfer of the executable to the nodes:

 transfer_executable = False

and I'd think to add a Requirements line like this to the submit file:

      requirements = Arch=="X86_64" || Arch=="INTEL"

 But that only means that It require that, not that It can run there, What line should I add to the submitFile to allow the task run in both architectures at the same time?

 

Thank you.

----
Edier Alberto Zapata Hernández
Est. Ingeniería de Sistemas
Universidad de Valle

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-- 
----
Edier Alberto Zapata Hernández
Est. Ingeniería de Sistemas
Universidad de Valle