Re: [Condor-users] problem with the dependent files

[Derek Weitzel <dweitzel@xxxxxxxxxxx>]

Does the R program open the file C:/Sim_Test/New_Test_Case/one.R  (Absolute path) or ./one.R (relative to working directory).  

Condor will sandbox the job inside a unique directory.  The input files will be placed in that directory, the same directory the executable is started in.

Derek Weitzel
Graduate Research Assistant
University of Nebraska Holland Computing Center

On Dec 14, 2010, at 12:01 AM, Shruti Mudra wrote:

> Hi Everyone,
> 
> I have 6 windows connected to each other and a linux machine which is the head node i have a multiple instances of a R job that are submitted to the condor and when i submit these jobs to the condor and files are been shared to every machine i get a message in the error file it says
> 
> Error in file(file, "r", encoding = encoding) : 
>   cannot open the connection
> Calls: source -> file
> In addition: Warning message:
> In file(file, "r", encoding = encoding) :
>   cannot open file 'C:/Sim_Test/New_Test_Case/one.R': No such file or directory
> Execution halted
> 
> 
> Here is my submit file
> ************************************************************************************
> #test_case
> 
> universe = vanilla
> Executable = C:\Progra~1\R\R-2.11.1-x64\bin\RScript.exe
> getenv = true
> 
> should_transfer_files = yes
> when_to_transfer_output = ON_EXIT
> transfer_input_files = one.R,two.R,three.R,four.R,five.R,six.R,seven.R
> transfer_executable = false
> 
> Output = test_case.out
> Log = test_case.log
> error = test_case.error
> 
> input = sim_2.R
> arguments = sim_2.R
> queue  
> 
> input = sim_4.R
> arguments = sim_4.R
> queue  
> 
> input = sim_6.R
> arguments = sim_6.R
> queue  
> 
> input = sim_8.R
> arguments = sim_8.R
> queue
> 
> input = sim_10.R
> arguments = sim_10.R
> queue  
> 
> input = sim_12.R
> arguments = sim_12.R
> queue  
> 
> input = sim_14.R
> arguments = sim_14.R
> queue  
> 
> input = sim_18.R
> arguments = sim_18.R
> queue  
> 
> input = sim_20.R
> arguments = sim_20.R
> queue  
> 
> input = sim_22.R
> arguments = sim_22.R
> queue
> ************************************************************************************
> 
> can any one tell me what is to be done.
> 
> Thanks,
> 
> 
> 
> _______________________________________________
> Condor-users mailing list
> To unsubscribe, send a message to condor-users-request@xxxxxxxxxxx with a
> subject: Unsubscribe
> You can also unsubscribe by visiting
> https://lists.cs.wisc.edu/mailman/listinfo/condor-users
> 
> The archives can be found at:
> https://lists.cs.wisc.edu/archive/condor-users/

Attachment: smime.p7s
Description: S/MIME cryptographic signature