Re: [Condor-users] failed to run interconnected R file on condor

[Ian Chesal <ichesal@xxxxxxxxxxxxxxxxxx>]

Sounds like you need to transfer the included file as well. Condor doesn't know about dependencies. You have to tell it about them. Try:

transfer_input_files = bay_alpha.R

For details see http://www.cs.wisc.edu/condor/manual/v7.4/condor_submit.html

- Ian

On 2010-08-14, at 5:14 PM, Shruti Mudra <shruti.mudra@xxxxxxxxx> wrote:

Hi Everyone,

 

I have a R file(Simulate_Data.R) which is calling other R file(bay_alpha.R) when i submit the calling file(Simulate_Data.R) to the condor i'm getting a error 

 

Error in file(file, "r", encoding = encoding) :
  cannot open the connection
Calls: source -> file
In addition: Warning message:
In file(file, "r", encoding = encoding) :
  cannot open file 'C:/Users/test_case/bay_alpha.R': Permission denied
Execution halted

 

here is my submit file test_R.sub

 

universe = vanilla

Executable =  Rscript.bat

should_transfer_files = YES

when_to_transfer_output = ON_EXIT

arguments = Simulate_Normal_Data.R

input = Simulate_Normal_Data.R

Output = test_r_out.out

Log = test_r_log.log

error = error_r.error

queue

 

where RScript.bat is as follows

 

set PATH=path to the R bin folder

R CMD BATCH --vanilla %1

 

can anyone please tell me where i went wrong

 

Thanks,

 

 

 

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