Re: [Condor-users] Fwd: condor help

[Chinh Le <lechinh@xxxxxxxxxx>]

Hwanhee Lee,

Thank you for trying to help; I need to use the standard universe ( not 
the vanilla universe ), because I believe I need to checkpoint my 
standalone program which takes a long time ( about 50 hours ) to 
complete. Also, I need  to build a standalone matlab because not all 
nodes have matlab.

Chinh Le

Hwanhee Lee wrote:
> Hello!
>  
> I have two questions about Condor.
>  
> I am using Condor to run R, windows statistic program.
>  
> Here is my submit file.
>  
> universe = vanilla
> requirements = OpSys == "WINNT60" && Arch == "INTEL" && HAS_R==TRUE
> should_transfer_files = YES
> transfer_input_files = hwl0.R, lars_0.9-7.zip, mvtnorm_0.9-7.zip
> when_to_transfer_output = ON_EXIT
> executable = batch.bat
> arguments = BATCH hwl0.R
> input = hwl0.R
> Output = result/out$(Process).txt
> Log = result/log$(Process).txt
> Error = result/err$(Process).txt
> queue
>  
> Here is my batch.bat file.
>  
> set path=c:\PROGRA~2\R\R-2.8.0\bin;%path%
> Rcmd %*
>  
> The errors,
>  
> 1) Install package problem
> 2) Running problem.
>  
> For 1), When I tried to install R packages,  sometimes there is error, 
> sometimes there is no error.
> The error is that "I cannot install packages because there is already 
> the same packages."
> To prevent this situation, I  revised my program so that don't 
> reinstall the existing packages.
> However, I am having an error, "I cannot use the package what I tried 
> to install before."
>  
> Usually, in the windows xp, vista, we can always reinstall any 
> packages without having errors.
>  
>  
> For 2), One of my job doesn't run on the condor machine, but the job 
> runs on my own computer.
> It's not the problem of version of R or R packages. I already checked 
> about it.
> The message is "subscription is out of bound."
>  
> I tried to avoid those problems for several days, but I cannot. Please 
> help me.
> Thanks.
> --
> Hwanhee Lee
> Ph.D Student
> Department of Mathematical Sciences
> Clemson University
>
> Office: 864  656 4571
> Mobile : 864 314 6875
> e-mail: hwanhel@xxxxxxxxxxxxx <mailto:hwanhel@xxxxxxxxxxxxx>
> web: http://www.math.clemson.edu/grad_students/hwanhel.htm
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