Re: [Condor-users] segmentation fault in vanilla universe

["hailong.yang1115" <hailong.yang1115@xxxxxxxxx>]



Hi Satyanarayan,

 

Have you tried to run the script file run_matlab.sh on the execute machine grid1.iiitm.ac.in? Did it run correctly? It seems the commands you wrote in the script file met with segmentation faults.

 

-Hailong

 

2009-12-30

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***********************************************
* Hailong Yang, PhD. Candidate
* Sino-German Joint Software Institute,
* School of Computer Science&Engineering, Beihang University
* Phone: (86-010)82315908
* Email: hailong.yang1115@xxxxxxxxx
* Address: G413, New Main Building in Beihang University,
*              No.37 XueYuan Road,HaiDian District,
*              Beijing,P.R.China,100191
***********************************************

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发件人： satyanarayan rao

发送时间： 2009-12-30  19:13:23

收件人： Condor-Users Mail List

抄送：

主题： [Condor-users] segmentation fault in vanilla universe

Hello All,

I am having problem with running the matlab command using vanilla universe.
I have matlab installed on two nodes, i am using only one(grid1.iiitm.ac.in) in submit by putting it in requirement parameter.
The command which i am using is successfully running on the node, but if i am submitting using vanilla universe it is giving error.
Process which i followed is following.

[grid-node@grid-server ~]$ cat run_matlab.sh
#!/bin/bash
/usr/local/Matlab/bin/matlab -nojvm -nosplash -nodisplay < /usr/local/Matlab/bin/test_matlab.m
hostname
[grid-node@grid-server ~]$

[grid-node@grid-server ~]$ cat vanilla.submit
          
            Executable     = /home/grid-node/run_matlab.sh
            Universe       = vanilla
            Requirements   = (machine=="grid1.iiitm.ac.in")
            Error   = err.$(Process)
            Output  = out.$(Process)
             Log = foo.log
             transfer_executable = true
             should_transfer_files = YES
             when_to_transfer_output = ON_EXIT
             Queue 10

[grid-node@grid-server ~]$


[grid-node@grid-server ~]$ condor_status

Name               OpSys      Arch   State     Activity LoadAv Mem   ActvtyTime

slot1@anlab-node8. LINUX      INTEL  Unclaimed Idle     0.000   497  0+03:10:05
slot2@anlab-node8. LINUX      INTEL  Unclaimed Idle     0.000   497  0+15:03:00
slot1@grid-server. LINUX      INTEL  Unclaimed Idle     0.840  1006  0+03:15:07
slot2@grid-server. LINUX      INTEL  Unclaimed Idle     0.000  1006  0+15:15:31
grid1.iiitm.ac.in  LINUX      INTEL  Unclaimed Idle     0.000   242  0+02:15:04

                     Total Owner Claimed Unclaimed Matched Preempting Backfill

         INTEL/LINUX     5     0       0         5       0          0        0

               Total     5     0       0         5       0          0        0
[grid-node@grid-server ~]$


[grid-node@grid-server ~]$ condor_submit vanilla.submit
Submitting job(s)..........
Logging submit event(s)..........
10 job(s) submitted to cluster 1042.
[grid-node@grid-server ~]$

[grid-node@grid-server ~]$ cat out.1
grid1.iiitm.ac.in
[grid-node@grid-server ~]$ cat err.1
/opt/condor-7.2.4/local.grid1/execute/dir_15382/condor_exec.exe: line 2: 15385 Segmentation fault      /usr/local/Matlab/bin/matlab -nojvm -nosplash -nodisplay </usr/local/Matlab/bin/test_matlab.m
[grid-node@grid-server ~]$

Any help will be greatly appreciated.

Thanks and Regards,
Satyanarayan Rao


--
Satyanarayan Rao
ABV-IIITM Gwalior
http://www.iiitm.ac.in
Ph: +91-9179346657