[Condor-users] wu-blast

[Gary Orser <orser@xxxxxxxxxxx>]

Hi all,

Having a really dumb problem, and wondered if anyone else had solved
it.

Trying to use wu blastp and am getting this error.

FATAL:  Invalid program name:  condor_exec.exe.  This is the unified BLASTA
        program from the WU BLAST package (see http://blast.wustl.edu).  It is
        not intended to be invoked by this name.  Instead, make soft links to
        it with the UNIX "ln" command, to produce names that contain the
        strings "blastp", "blastn", "blastx", "tblastn" and "tblastx" anywhere
        within them.  Alphabetic case is unimportant.  See the UNIX man
        (manual) page for the "ln" command for more information on creating
        soft links (the -s option).  Hard links can also be made by omitting
        -s, but they may be more difficult to manage.EXIT CODE 28

Looks like blastp has to be the first command line argument, and it's
not under condor.

Anybody have a workaround?

Cheers, Gary
------------------------------------------------------
Gary Orser
Department of Microbiology
Montana State University
1 Lewis Hall, Bozeman MT, 59717