Re: [Condor-users] Error funning jobs on hetrogenous cluster

[Alain Roy <roy@xxxxxxxxxxx>]

On Oct 24, 2007, at 3:22 AM, Atle Rudshaug wrote:

> I have a test cluster with one Debian, one Kubuntu and one Fedora
> node. I get different errors on all the nodes. I guess I need a local
> executable on every node compiled for that spesific distro? Is there
> some kind of requirement I can state in the submit file that can
> specify distro the executable needs to run? Is there some way to send
> my own libraries that my executable needs or do I have to have them on
> the same path on each node? Can I have them on NFS? Guess I need to
> compile them with NFS paths to lib-files in the Makefile then?
>
> #Submit file
> universe        = vanilla
> executable    = dagoc
> output           = dagoc.out.$(CLUSTER).$(PROCESS)
> error             = dagoc.err.$(CLUSTER).$(PROCESS)
> log               = dagoc.log.$(CLUSTER)
> should_transfer_files = YES
> when_to_transfer_output = ON_EXIT
> transfer_input_files = /mnt/dagocproject/dbases/TEST.db
> arguments       = -c -start=10 -stop=20 /mnt/dagocproject/setups/ 
> TEST_remote.sup
> queue 5
>
>
> What does the following error mean?
> dagoc.err.102.0 and dagoc.err.102.4
> ---------------------------------------------------------------------- 
> --------------
> condor_exec.exe: symbol lookup error: condor_exec.exe: undefined
> symbol:  
> _ZSt22__uninitialized_copy_aIN9__gnu_cxx17__normal_iteratorIPKSsSt6vec 
> torISsSaISsEEEEPSsSsET0_T_SA_S9_SaIT1_E

It looks like dynamic linking failed. A couple of ideas:

1) Use static linking instead of dynamic linking.

2) Transfer the dynamic libraries you need along with the executable.

-alain