[Condor-users] Help with Java program...on Condor run Cluster

["roy hill \(IGER-WP\)" <roy.hill@xxxxxxxxxxx>]

Title: Help with Java program...on Condor run Cluster

Dear All,

Not sure if you can help started trying to run Weka on a Linux Condor Cluster…

Somewhere along the route of submitting a job from the submit machine to the node "condor_exec.exe" is getting into the command for the node to execute… any ideas where I should look for this… I'm confused but as a beginner probably not surprising anyhow any help would be appreciated.

Below is the command I'm using as a test…
 
"weka_condor weka.classifiers.trees.J48 -t /data/wekadata/iris.arff"

Best regards,
Roy.

------------------------------

Log dump.

000 (496.000.000) 03/26 09:54:57 Job submitted from host: <xxx.xxx.xxx.xxx:32773>
...
001 (496.000.000) 03/26 09:55:01 Job executing on host: <169.254.56.2:32769>
...
007 (496.000.000) 03/26 09:55:01 Shadow exception!
        Error from starter on node1.igerclust1: Failed to execute 'java condor_exec.exe weka.classifiers.trees.J48 -t /data/wekadata/iris.arff': No such file or directory

        0  -  Run Bytes Sent By Job
        0  -  Run Bytes Received By Job
...
001 (496.000.000) 03/26 09:55:03 Job executing on host: <169.254.56.2:32769>
...
007 (496.000.000) 03/26 09:55:03 Shadow exception!
        Error from starter on node1.igerclust1: Failed to execute 'java condor_exec.exe weka.classifiers.trees.J48 -t /data/wekadata/iris.arff': No such file or directory

        0  -  Run Bytes Sent By Job
        0  -  Run Bytes Received By Job

---------------------------------------------------------
# File weka_condor ..
##########################
#   weka_condor script
#   Set up SDF file for Condor and run it
##########################
#
#echo "Job started "`date`
export WEKAHOME=/usr/bbsrc_common/weka-3-4-10
export WEKADATA=/data/wekadata
export CLASSPATH=$CLASSPATH:$WEKAHOME/weka.jar
allargs="$*"
echo "Weka submitted "`date`
# run Condor with the basic SDF + arguments param
condor_submit -a "arguments=$allargs" /usr/bbsrc_common/EMBOSS/bin/weka_SDF
#echo "Job done "`date`

---------------------------------------------
# File weka_SDF

##########################
#   Example of running weka
#   use condor_submit -a "arguments= ..." thisfile
##########################
executable=java
error=weka_$(Cluster).error
output=weka_$(Cluster).stdout
log=weka_$(Cluster).log
getenv=True
copy_to_spool=False
universe=vanilla
notification=never
transfer_executable=False
should_transfer_files=YES
when_to_transfer_output = ON_EXIT
queue