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Re: [Condor-users] MPI Job not transfering output back.
- Date: Tue, 14 Mar 2006 09:34:36 -0700
- From: rnayar@xxxxxxxx
- Subject: Re: [Condor-users] MPI Job not transfering output back.
Hey everyone,
I ran to a bit of a hitch and wanted to see if anyone has a solution to this
problem. I'm trying to run an MPI job and it actually does run but the output
files that are generated are not the ones copied back. Here is an example I
wrote a simple submit file that looks like the following:
[condor@panndaa execute]$ more john_submit
universe = MPI
executable = john
arguments= -test
error = meow$(NODE).err
output = meow$(NODE).txt
log = meow.log
machine_count = 2
should_transfer_files = yes
when_to_transfer_output = on_exit
transfer_input_files = john, john.conf
queue
Everything looks normal.. and when i run the job it creates a sub-directory to
my execute directory and starts populating my output file.
[condor@panndaa execute]$ ls
dir_20260 john.conf meow0.err meow1.err meow.log procgroup.125.0
john john_submit meow0.txt meow1.txt mp1script
[condor@panndaa execute]$ cd dir_20260/
[condor@panndaa dir_20260]$ ls
condor_exec.exe john john.conf meow0.err meow0.txt procgroup.125.0
[condor@panndaa dir_20260]$ more procgroup.125.0
panndaa.NMSU.Edu 0 condor_exec condor
tango.NMSU.Edu 1 condor_exec condor
[condor@panndaa dir_20260]$ more meow0.txt
Benchmarking: Traditional DES [64/64 BS MMX]... DONE
Many salts: nan c/s real, 1156210.00 c/s virtual
Only one salt: 962521.00 c/s real, 980710.00 c/s virtual
Benchmarking: BSDI DES (x725) [64/64 BS MMX]... DONE
Many salts: nan c/s real, 39262.00 c/s virtual
Only one salt: 37928.00 c/s real, 38636.00 c/s virtual
Benchmarking: FreeBSD MD5 [32/32]... DONE
Raw: 8769.00 c/s real, 8895.00 c/s virtual
Benchmarking: OpenBSD Blowfish (x32) [32/32]... DONE
Raw: 580.00 c/s real, 587.00 c/s virtual
Benchmarking: Kerberos AFS DES [48/64 4K MMX]...
Now here is where it gets weird.. when the job is over my outputs are completely
empty..
[condor@panndaa execute]$ dir
john john.conf john_submit meow0.err meow0.txt meow1.err meow1.txt
meow.log mp1script
[condor@panndaa execute]$ ls -la
total 512
drwxrwxrwt 2 condor condor 4096 Mar 13 21:30 .
drwx------ 21 condor condor 4096 Mar 13 21:24 ..
-rwxrwxr-x 1 condor condor 432800 Mar 13 01:26 john
-rw-r--r-- 1 condor condor 11755 Mar 13 01:26 john.conf
-rw-r--r-- 1 condor condor 240 Mar 13 21:24 john_submit
-rw-rw-r-- 1 condor condor 0 Mar 13 21:29 meow0.err
-rw-rw-r-- 1 condor condor 0 Mar 13 21:29 meow0.txt
-rw-r--r-- 1 condor condor 0 Mar 13 21:30 meow1.err
-rw-r--r-- 1 condor condor 0 Mar 13 21:30 meow1.txt
-rw-rw-r-- 1 condor condor 3382 Mar 13 21:30 meow.log
-rwxr-xr-x 1 condor condor 1048 Mar 13 01:26 mp1script
-rw-r--r-- 1 condor condor 230 Mar 13 03:10 .ssh_host_rsa_key.
Anyone know whats going on?
thanks
Danny N
NMSU