Mailing List Archives
Authenticated access
|
|
![[Computer Systems Lab]](http://www.cs.wisc.edu/pics/csl_logo.gif)
|
[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
Re: [Condor-users] [Globus-discuss] Problem in Job Submission to Condor through GT4
- Date: Thu, 13 Oct 2005 15:18:46 -0600
- From: Peter G Lane <lane@xxxxxxxxxxx>
- Subject: Re: [Condor-users] [Globus-discuss] Problem in Job Submission to Condor through GT4
On Thu, 2005-10-13 at 11:49 -0400, Natarajan, Senthil wrote:
> Peter,
> I applied the patch and corrected the XML Job description to
> "transfer_output_files" and changed to absolute path. Then I submitted
> the Job.
> Here is what's happening.
> 1) It is just a simple shell script job as I attached in the previous
> mail, suppose to take only 30 sec since my argument is 30.
> 2) But it is running continuously, meaning condor runs this job for ~ 3
> mins then go back to idle after some ~ 2 or 3 mins it runs the job until
> my grid credential proxy expires then globus destroys the job.
> 3) What's happening is, condor execute the job in an execute machine in
> a temp directory say dir_15264 under execute directory and creates the
> output file called _condor_stdout_214.0
> 4) In the Globus XML Job description we mentioned to copy the file
> /home/senthil/ stdout.j3, I guess Globus informs condor that after
> finishing the job, copy the output file named (/home/senthil/stdout.j3)
> and condor assumes this job will produce this file and keep on running
> the job until it sees the output file globus mentioned. So I believe
> here the problem is the communication gap between Globus and condor.
> Globus doesn't know what file condor creates, (if we know that we can
> specify that file in the job description. ) and condor is not informing
> the Globus what file it created.
> 5) If the job directly submitted to the condor, it know what file it
> creates and copies that file back to the job submitted machine.
> Here I am CC this mail to our friend Dan Bradely from Wisconsin (Condor
> person) also, hope if he know something he will help us.
A Google search on "condor transfer_output_files" turned this up:
"WARNING: Do not specify transfer_output_file in the submit description
file unless there is a really good reason - it is best to let Condor
figure things out by itself based upon what the job."
This is from the following URL:
http://www.caenn.wisc.edu/manuals/condor6/5_2Release_Notes.html
Does it work if you simply remove the transfer_output_files elements?
Peter
P.S. to any Condor guys reading this, it looks like there's a typo
("transfer_output_file" should be "transfer_output_file"?).
>
> Thanks,
> Senthil
>
>
> Note:
> Here I am also attaching the condor.pm and the logfile dump.
>
>
> -----Original Message-----
> From: Peter G Lane [mailto:lane@xxxxxxxxxxx]
> Sent: Wednesday, October 12, 2005 3:26 PM
> To: Natarajan, Senthil
> Cc: discuss@xxxxxxxxxx; condor-users@xxxxxxxxxxx
> Subject: RE: [Globus-discuss] Problem in Job Submission to Condor
> through GT4
>
> Attached is a patch for your condor.pm. There is also a new update
> package for anyone else who's following along. You should change
> "transfer_output_file" to "transfer_output_files" in your XML job
> description. Also, mine hung on Pending (condor_q listed the two jobs
> with status 'I') unless I made the transfer_output_files values absolute
> paths.
>
> Peter
>
> On Wed, 2005-10-12 at 12:37 -0600, Peter G Lane wrote:
> > On Wed, 2005-10-12 at 10:20 -0400, Natarajan, Senthil wrote:
> > > Peter,
> > > I ran ./setup-globus-job-manager-condor, it updated the condor.pm.
> > > But still the output file is not copied back to the submitted
> machine.
> >
> > The directives are definitely making it into your condor job
> > description. I even dumped the condor job description myself right
> > before it's submitted and verified this.
> >
> > Now then, I went back and read the condor documentation and it looks
> > like there is a typo in what I was given for one of the directive
> names:
> >
> > http://bugzilla.globus.org/bugzilla/show_bug.cgi?id=3773#c1
> >
> > It looks like it should be "transfer_output_files" not
> > "transfer_output_file". I'm not sure why Condor doesn't complain
> about
> > this, though. It seems like it'd be a good idea. Anyway, I'll fix
> this
> > and give you a patch rather than making you download a new update
> > package (although I'll obviously make one).
> >
> > >
> > > I was wondering is this problem is happening only with GT4, or even
> the
> > > older version of Globus has it.
> >
> > Considering these are the exact same Perl modules sans GT4 updates,
> GT2
> > shouldn't have been able to do this without hacking the condor.pm
> > either.
> >
> > > Then how the people are really
> > > submitting the Jobs to Globus to run on Condor pool?
> >
> > Either they aren't staging anything or the nodes of the pool share a
> > file system with the node that GRAM is installed on.
> >
> > > Is that I am the only person having this problem?
> >
> > No, but others have opted for just hacking the condor.pm like you did.
> >
> > > Is there any way we can get this done, all I am trying is I have a
> > > simple shell script it sleeps and prints counter value in the output
> > > file. I want that output file copied back, from the executing
> machine to
> > > job submitted machine.(condor does this if I directly submit to
> condor
> > > pool but not through Globus)
> >
> > I apologize that this is taking so long. I hope I made it clear that
> > this is development code. I think we're one step away from getting
> this
> > to work, though. I appreciate you hanging in there. Unfortunately
> all
> > our Condor installations have shared file systems, so it's hard for us
> > to test this sort of thing without wonderful people like you. :)
> >
> > >
> > > Here I am attaching the
> > > 1) condor.pm.
> > > 2) Shell Script (My test job)
> > > 3) XML Job description
> > > 4) logfile dump
> > > 5) condor job description file (analogous to the Globus XML Job
> > > description)
> > > 6) output file got when I ran the same job by directly submitting to
> the
> > > condor pool.
> > >
> > > Could any one please help me on this.
> > > Thanks,
> > > Senthil
> > >
> > >
> > > -----Original Message-----
> > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx]
> > > Sent: Tuesday, October 11, 2005 6:13 PM
> > > To: Natarajan, Senthil
> > > Cc: discuss@xxxxxxxxxx
> > > Subject: RE: [Globus-discuss] Problem in Job Submission to Condor
> > > through GT4
> > >
> > > On Tue, 2005-10-11 at 17:18 -0400, Natarajan, Senthil wrote:
> > > > Peter,
> > > > Any way I rebuild all the 4 packages with the force option but
> still
> > > > having the same problem. I noticed (update time) the
> > > > $GLOBUS_LOCATION/lib/perl/Globus/GRAM/JobManager/condor.pm was not
> > > > modified by any of these package rebuild still showing the old
> date
> > > and
> > > > time.
> > >
> > > I looked over the post install instructions that I gave you and
> noticed
> > > I block copied the wrong setup script from my directory listing,
> sorry
> > > about that. It should have been setup-globus-job-manager-condor.
> > > Here's a dump of what I just did to verify that the condor.pm was
> being
> > > updated:
> > >
> > > % ls -l $GLOBUS_LOCATION/lib/perl/Globus/GRAM/JobManager/condor.pm
> > > -rw-r--r-- 1 lane lane 17K Oct 10
> > > 12:05
> > >
> /usr/local/globus/globus-4.0.1/lib/perl/Globus/GRAM/JobManager/condor.pm
> > > % cd $GLOBUS_LOCATION/setup/globus/
> > > % ./setup-globus-job-manager-condor
> > > checking for condor_submit... /opt/condor-6.7.6/bin/condor_submit
> > > checking for condor_rm... /opt/condor-6.7.6/bin/condor_rm
> > > find-condor-tools: creating ./config.status
> > > config.status: creating condor.pm
> > > config.status: creating globus-condor-print-config
> > > % ls -l $GLOBUS_LOCATION/lib/perl/Globus/GRAM/JobManager/condor.pm
> > > -rw-r--r-- 1 lane lane 17K Oct 11
> > > 16:06
> > >
> /usr/local/globus/globus-4.0.1/lib/perl/Globus/GRAM/JobManager/condor.pm
> > >
> > > Peter
> > >
> > > >
> > > > Please find the attached condor.pm (after all 4 packages forceful
> > > > rebuild) and the logfile dump.
> > > >
> > > > Here is package build.
> > > >
> > > > [globus@gis14 globus-4.0.1]$ gpt-build --force
> > > > globus_wsrf_gram_service_java-0.78.tar.gz gcc32dbg
> > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR
> > > > globus_wsrf_gram_service_java
> > > > gpt-build ====> Changing to
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav
> > > > a-0.78.0/
> > > > gpt-build ====> BUILDING globus_wsrf_gram_service_java
> > > > gpt-build ====> Changing to
> > > /usr/local/GridComputing/globus-4.0.1/BUILD
> > > > gpt-build ====> REMOVING empty package
> > > > globus_wsrf_gram_service_java-noflavor-dev
> > > > gpt-build ====> REMOVING empty package
> > > > globus_wsrf_gram_service_java-noflavor-rtl
> > > > [globus@gis14 globus-4.0.1]$ gpt-build --force
> > > > globus_scheduler_event_generator-1.0.tar.gz gcc32dbg
> > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR
> > > > globus_scheduler_event_generator
> > > > gpt-build ====> Changing to
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_scheduler_event_gener
> > > > ator-1.0/
> > > > gpt-build ====> BUILDING FLAVOR gcc32dbg
> > > > gpt-build ====> Changing to
> > > /usr/local/GridComputing/globus-4.0.1/BUILD
> > > > gpt-build ====> REMOVING empty package
> > > > globus_scheduler_event_generator-gcc32dbg-pgm_static
> > > > gpt-build ====> REMOVING empty package
> > > > globus_scheduler_event_generator-noflavor-data
> > > > gpt-build ====> REMOVING empty package
> > > > globus_scheduler_event_generator-noflavor-doc
> > > > [globus@gis14 globus-4.0.1]$ gpt-build --force
> > > > globus_gram_job_manager-7.7.tar.gz gcc32dbg
> > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR
> > > globus_gram_job_manager
> > > > gpt-build ====> Changing to
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager-7.7/
> > > > gpt-build ====> BUILDING FLAVOR gcc32dbg
> > > > gpt-build ====> Changing to
> > > /usr/local/GridComputing/globus-4.0.1/BUILD
> > > > gpt-build ====> REMOVING empty package
> > > > globus_gram_job_manager-gcc32dbg-dev
> > > > gpt-build ====> REMOVING empty package
> > > > globus_gram_job_manager-gcc32dbg-pgm_static
> > > > gpt-build ====> REMOVING empty package
> > > > globus_gram_job_manager-gcc32dbg-rtl
> > > > [globus@gis14 globus-4.0.1]$ gpt-build --force
> > > > globus_gram_job_manager_setup_condor-2.9.tar.gz gcc32dbg
> > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR
> > > > globus_gram_job_manager_setup_condor
> > > > gpt-build ====> Changing to
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager_setu
> > > > p_condor-2.9/
> > > > gpt-build ====> BUILDING globus_gram_job_manager_setup_condor
> > > > gpt-build ====> Changing to
> > > /usr/local/GridComputing/globus-4.0.1/BUILD
> > > > gpt-build ====> REMOVING empty package
> > > > globus_gram_job_manager_setup_condor-noflavor-data
> > > > gpt-build ====> REMOVING empty package
> > > > globus_gram_job_manager_setup_condor-noflavor-dev
> > > > gpt-build ====> REMOVING empty package
> > > > globus_gram_job_manager_setup_condor-noflavor-doc
> > > > gpt-build ====> REMOVING empty package
> > > > globus_gram_job_manager_setup_condor-noflavor-pgm_static
> > > > gpt-build ====> REMOVING empty package
> > > > globus_gram_job_manager_setup_condor-noflavor-rtl
> > > >
> > > >
> > > >
> > > >
> > > >
> > > > -----Original Message-----
> > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx]
> > > > Sent: Tuesday, October 11, 2005 3:34 PM
> > > > To: Natarajan, Senthil
> > > > Cc: discuss@xxxxxxxxxx
> > > > Subject: RE: [Globus-discuss] Problem in Job Submission to Condor
> > > > through GT4
> > > >
> > > > I think the other ones are good. The extension handler seems to
> > > working
> > > > appropriately. All you need is the
> > > > globus_gram_job_manager_setup_condor-2.9 package to interpret the
> > > values
> > > > that the extension handler is setting up for you.
> > > >
> > > > Peter
> > > >
> > > > On Tue, 2005-10-11 at 14:39 -0400, Natarajan, Senthil wrote:
> > > > > Peter,
> > > > > You mean to install those 4 packages only right with the --force
> > > > option?
> > > > > Thanks,
> > > > > Senthil
> > > > >
> > > > > -----Original Message-----
> > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx]
> > > > > Sent: Tuesday, October 11, 2005 2:36 PM
> > > > > To: Natarajan, Senthil
> > > > > Cc: discuss@xxxxxxxxxx
> > > > > Subject: RE: [Globus-discuss] Problem in Job Submission to
> Condor
> > > > > through GT4
> > > > >
> > > > > Yeah, as I expected the code to put those directives in the
> condor
> > > job
> > > > > description are missing. I also see your custom additions, so
> you
> > > > > probably just need to force a rebuild. Try gpt-build again with
> the
> > > > > --force option followed by the instructions I gave you last time
> for
> > > > > redoing the post install steps. If that still doesn't work,
> capture
> > > > > your session trying to build it and send it back to the list.
> For
> > > > some
> > > > > reason that condor update package isn't being installed.
> > > > >
> > > > > Peter
> > > > >
> > > > > On Tue, 2005-10-11 at 09:34 -0400, Natarajan, Senthil wrote:
> > > > > > Peter,
> > > > > > Here I attached the condor.pm.
> > > > > > I just followed your instruction to install those 4 packages
> > > > > > (using gpt-build). Please let me know whether it has been
> properly
> > > > > > installed or what needs to be done.
> > > > > > Thanks,
> > > > > > Senthil
> > > > > >
> > > > > >
> > > > > > -----Original Message-----
> > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx]
> > > > > > Sent: Monday, October 10, 2005 4:22 PM
> > > > > > To: Natarajan, Senthil
> > > > > > Cc: discuss@xxxxxxxxxx
> > > > > > Subject: RE: [Globus-discuss] Problem in Job Submission to
> Condor
> > > > > > through GT4
> > > > > >
> > > > > > On Mon, 2005-10-10 at 15:26 -0400, Natarajan, Senthil wrote:
> > > > > > > Peter,
> > > > > > > I ran. /setup-globus-scheduler-provider-condor
> > > > > > > Then I corrected the typo WhenToTransferFiles to
> > > > > WhenToTransferOutput.
> > > > > > > Then I submitted the job, but still it is not copying the
> output
> > > > > file
> > > > > > > back to the submitted machine. I guess since condor is
> running
> > > the
> > > > > job
> > > > > > > in some tmp execute directory in some other machine, globus
> > > don't
> > > > > know
> > > > > > > about that (some kind of communication is missing between
> condor
> > > > and
> > > > > > > globus) machine and directory, so it is not copying back.
> > > > > > >
> > > > > > > When you tried did your job ran in your job submitted
> machine
> > > > itself
> > > > > > or
> > > > > > > in other machine?
> > > > > >
> > > > > > I only have a local, single-machine installation of Condor
> that I
> > > > test
> > > > > > with. All I do is make sure the correct directives are in the
> > > > Condor
> > > > > > job description. If I can verify that the directives are
> being
> > > > > appended
> > > > > > and it doesn't work, then it's a Condor issue. I know the
> > > > directives
> > > > > > are being written because Condor complains if I submit your
> job
> > > > > > description with the typo (i.e. it complains that it has
> > > > > > should_transfer_files but not WhenToTransferOutput. Fixing
> the
> > > typo
> > > > > > prevents Condor from complaining).
> > > > > >
> > > > > > >
> > > > > > > With out running the setup-globus-scheduler-provider-condor
> and
> > > > > > > modifying WhenToTransferFiles to WhenToTransferOutput, I
> ran
> > > the
> > > > > job
> > > > > > on
> > > > > > > Friday , It was copying the file back if the job is running
> in
> > > the
> > > > > > same
> > > > > > > machine as the job submitted machine.
> > > > > > >
> > > > > > > I was curious did you test on the same machine (job
> submission
> > > and
> > > > > > > execution in the same machine) or you submitted the job in
> one
> > > > > machine
> > > > > > > and it ran on different machine?
> > > > > > >
> > > > > > > Please let me know.
> > > > > > > Here I am again attaching the logfile dump and the XML Job
> > > > > > description.
> > > > > > > Thanks,
> > > > > > > Senthil
> > > > > > >
> > > > > > >
> > > > > > > Note:
> > > > > > > In order to run the condor job, I added these lines. In
> > > > > > > $GLOBUS_LOCATION/lib/perl/Globus/GRAM/JobManager/condor.pm
> (in
> > > > line
> > > > > > > 280)
> > > > > > >
> > > > > > > print SCRIPT_FILE "should_transfer_files = IF_NEEDED\n";
> > > > > > > print SCRIPT_FILE "WhenToTransferOutput = ON_EXIT\n";
> > > > > > > print SCRIPT_FILE "transfer_files = ONEXIT\n";
> > > > > >
> > > > > > Like I said before, this is exactly what I add if the updated
> > > condor
> > > > > > package is installed properly. Can you send me the following
> > > file:
> > > > > >
> > > > > > $GLOBUS_LOCATION/lib/perl/Globus/GRAM/JobManager/condor.pm
> > > > > >
> > > > > > I really don't think the updated condor.pm got installed.
> > > > Everything
> > > > > > else looks fine. I'm just not seeing output from the
> condor.pm
> > > > module
> > > > > > that indicates that it is putting these lines in the Condor
> job
> > > > > > description. You should be seeing something likes this:
> > > > > >
> > > > > > Mon Oct 10 12:18:22 2005 JM_SCRIPT: Using jm supplied job
> > > > > > dir: /home/lane/.globus/3cf6d2c0-39ba-11da-99c3-9071bceca9ea
> > > > > > Mon Oct 10 12:18:22 2005 JM_SCRIPT: Adding
> "should_transfer_files
> > > =
> > > > > YES"
> > > > > > Mon Oct 10 12:18:22 2005 JM_SCRIPT: Adding
> "WhenToTransferOutput =
> > > > > > ON_EXIT"
> > > > > > Mon Oct 10 12:18:22 2005 JM_SCRIPT: Adding
> "transfer_output_file
> > > =
> > > > > > stdout.j3, stderr.j3" Mon Oct 10 12:18:22 2005 JM_SCRIPT:
> About
> > > to
> > > > > > submit condor job
> > > > > >
> > > > > > That's straight out of my logfile after I installed the same
> > > package
> > > > > > that is on the web site and ran your corrected job
> description.
> > > > > >
> > > > > > Peter
> > > > > >
> > > > > > >
> > > > > > > If I remove these line still the jobs are not running.(i.e.
> it
> > > is
> > > > > not
> > > > > > > finding the HasTranferFile attribute in the requirement
> > > > expression)
> > > > > > >
> > > > > > >
> > > > > > >
> > > > > > > -----Original Message-----
> > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx]
> > > > > > > Sent: Monday, October 10, 2005 2:21 PM
> > > > > > > To: Natarajan, Senthil
> > > > > > > Cc: discuss@xxxxxxxxxx
> > > > > > > Subject: RE: [Globus-discuss] Problem in Job Submission to
> > > Condor
> > > > > > > through GT4
> > > > > > >
> > > > > > > I think the problem is that I neglected to tell you to
> re-run
> > > gpt-
> > > > > > > postinstall with the --force option. You should also be
> able to
> > > > cd
> > > > > to
> > > > > > > $GLOBUS_LOCATION/setup/globus and run
> './setup-globus-scheduler-
> > > > > > > provider-condor'. The later is much quicker.
> > > > > > >
> > > > > > > Also, WhenToTransferFiles should be WhenToTransferOutput.
> > > Fixing
> > > > > this
> > > > > > > typo in your job description and changing it for my system
> ran
> > > > just
> > > > > > fine
> > > > > > > for me.
> > > > > > >
> > > > > > > Peter
> > > > > > >
> > > > > > > On Mon, 2005-10-10 at 13:08 -0400, Natarajan, Senthil wrote:
> > > > > > > > Peter,
> > > > > > > > Here I attached the logfile dump and my XML job
> description.
> > > > > > > > Still it is not copying the output file back to the job
> > > > submitted
> > > > > > > > machine if the job runs on different machine. But if the
> job
> > > > runs
> > > > > on
> > > > > > > the
> > > > > > > > same machine it copies the output file.
> > > > > > > > Please let me know.
> > > > > > > >
> > > > > > > > Sorry, I couldn't get back to you. Actually I was out for
> more
> > > > > than
> > > > > > > > couple of days to attend the Grid Conference in Boston; I
> did
> > > > meet
> > > > > > > your
> > > > > > > > colleagues.
> > > > > > > > Thanks,
> > > > > > > > Senthil
> > > > > > > >
> > > > > > > >
> > > > > > > >
> > > > > > > > -----Original Message-----
> > > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx]
> > > > > > > > Sent: Thursday, September 29, 2005 3:53 PM
> > > > > > > > To: Natarajan, Senthil
> > > > > > > > Cc: discuss@xxxxxxxxxx
> > > > > > > > Subject: RE: [Globus-discuss] Problem in Job Submission to
> > > > Condor
> > > > > > > > through GT4
> > > > > > > >
> > > > > > > > On Thu, 2005-09-29 at 14:26 -0400, Natarajan, Senthil
> wrote:
> > > > > > > > > Peter,
> > > > > > > > > I changed the
> > > > > > > > $GLOBUS_LOCATION/lib/perl/Globus/GRAM/ExtensionsHandler.pm
> > > > > > > > > file according to your suggestion and I didn't get that
> > > parser
> > > > > > > error.
> > > > > > > > I
> > > > > > > > > submitted the job the job successfully executed but it
> > > didn't
> > > > > copy
> > > > > > > the
> > > > > > > > > output file back to the submitted machine (i.e our main
> > > > problem
> > > > > > and
> > > > > > > we
> > > > > > > > > are working on to solve that).
> > > > > > > > >
> > > > > > > > > I am pretty sure that what ever we are specifying under
> the
> > > > > > > extensions
> > > > > > > > > tag, globus is not recognizing it or it is not doing
> > > anything
> > > > > with
> > > > > > > > that.
> > > > > > > > > Because....
> > > > > > > > >
> > > > > > > > > i) Initially I had problem in executing the job itself,
> > > (i.e.)
> > > > > as
> > > > > > > soon
> > > > > > > > > as I submitted the job to globus, globus in turn submits
> the
> > > > job
> > > > > > to
> > > > > > > > the
> > > > > > > > > condor pool. And the jobs are idle and not running bcos
> of
> > > the
> > > > > job
> > > > > > > > > requirement.
> > > > > > > > > Requirements = (OpSys == "LINUX" && Arch == "INTEL") &&
> > > (Disk
> > > > >=
> > > > > > > > > DiskUsage) && ((Memory * 1024) >= ImageSize) &&
> > > > > > > > (TARGET.FileSystemDomain
> > > > > > > > > == MY.FileSystemDomain)
> > > > > > > > > The problem here is, there is no HasFileTransfer option
> in
> > > the
> > > > > > > > > requirement expression. In order to fix this I added the
> > > > > following
> > > > > > > two
> > > > > > > > > lines in the file
> > > > > > > > >
> $GLOBUS_LOCATION/lib/perl/Globus/GRAM/JobManager/condor.pm
> > > > > > > > > print SCRIPT_FILE "should_transfer_files = IF_NEEDED\n";
> > > > > > > > > print SCRIPT_FILE "WhenToTransferOutput = ON_EXIT\n";
> > > > > > > > > This fixed the job execution problem, but not copying
> the
> > > file
> > > > > > back
> > > > > > > to
> > > > > > > > > the submitted machine.
> > > > > > > >
> > > > > > > > This is exactly what I added to the Condor job description
> > > based
> > > > > on
> > > > > > > the
> > > > > > > > extensions. What you can do is add an extension element
> > > before
> > > > > all
> > > > > > > the
> > > > > > > > other extension elements to write a log file which dumps
> some
> > > > > useful
> > > > > > > > debugging info:
> > > > > > > >
> > > > > > > > <extensions>
> > > > > > > > <logfile>/home/me/logfile</logfile>
> > > > > > > > . . .
> > > > > > > > </extensions>
> > > > > > > >
> > > > > > > > If the packages are installed properly, you should see
> lines
> > > > like
> > > > > > the
> > > > > > > > following in this log file:
> > > > > > > >
> > > > > > > > Wed Sep 28 13:52:53 2005 JM_SCRIPT: Adding
> > > > "should_transfer_files
> > > > > =
> > > > > > > > ALWAYS"
> > > > > > > >
> > > > > > > > Wed Sep 28 13:52:53 2005 JM_SCRIPT: Adding
> > > "WhenToTransferOutput
> > > > =
> > > > > > > > ON_EXIT"
> > > > > > > >
> > > > > > > > Also, I don't see you specifying any transfer_input_file
> or
> > > > > > > > transfer_output_file extension elements. You need those
> to
> > > > > specify
> > > > > > > > which files to transfer to or from the compute node. GRAM
> > > will
> > > > > not
> > > > > > > set
> > > > > > > > those up for you automatically.
> > > > > > > >
> > > > > > > > Peter
> > > > > > > >
> > > > > > > > >
> > > > > > > > > ii) I submitted the problem; from here we are working to
> > > solve
> > > > > > this
> > > > > > > > > problem.
> > > > > > > > >
> > > > > > > > > iii) Now I commented out the above two lines which I
> added
> > > in
> > > > > > > > condor.pm.
> > > > > > > > > I submitted the XML Job description has the extensions
> tag
> > > > with
> > > > > > the
> > > > > > > > > options condor:should_transfer_files = YES and
> > > > > > > > > condor:WhenToTransferOutput = ON_EXIT. Now I back to
> stage
> > > > one,
> > > > > > that
> > > > > > > > is
> > > > > > > > > the jobs are not running and idle bcos of the
> requirement
> > > > > problem,
> > > > > > > it
> > > > > > > > > doesn't have the file transfer option even though we
> > > specified
> > > > > in
> > > > > > > the
> > > > > > > > > job description.
> > > > > > > > >
> > > > > > > > > In conclusion, some thing is overriding the extensions
> tag
> > > or
> > > > > the
> > > > > > > > > scripts like condor.pm are not understanding the
> extensions
> > > > > part.
> > > > > > > > > So after updating all these 4 packages, we are having
> the
> > > same
> > > > > > > > problem.
> > > > > > > > >
> > > > > > > > > Please help me on this, I am at University Of
> Pittsburgh,
> > > you
> > > > > can
> > > > > > > > reach
> > > > > > > > > me at 412-624-6578.
> > > > > > > > >
> > > > > > > > > Thanks,
> > > > > > > > > Senthil
> > > > > > > > >
> > > > > > > > >
> > > > > > > > >
> > > > > > > > > -----Original Message-----
> > > > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx]
> > > > > > > > > Sent: Wednesday, September 28, 2005 2:48 PM
> > > > > > > > > To: Natarajan, Senthil
> > > > > > > > > Cc: discuss@xxxxxxxxxx
> > > > > > > > > Subject: RE: [Globus-discuss] Problem in Job Submission
> to
> > > > > Condor
> > > > > > > > > through GT4
> > > > > > > > >
> > > > > > > > > On Wed, 2005-09-28 at 14:04 -0400, Natarajan, Senthil
> wrote:
> > > > > > > > > > Peter,
> > > > > > > > > > Thanks lot and I appreciate your help.
> > > > > > > > > > I successfully installed those packages. I am trying
> to
> > > > > execute
> > > > > > > the
> > > > > > > > > XML
> > > > > > > > >
> > > > > > > > > Excellent!
> > > > > > > > >
> > > > > > > > > > Job description with the new extension tags(
> > > > > > > > > > condor:should_transfer_files ,
> condor:transfer_output_file
> > > > > etc)
> > > > > > > Now
> > > > > > > > > the
> > > > > > > > > > globus parser is not recognizing these new tags its
> giving
> > > > > > parser
> > > > > > > > > error.
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > Looks like we need to include the Namespace of where
> these
> > > > new
> > > > > > > tags
> > > > > > > > > are
> > > > > > > > > > located. Did you include any additional namespace
> while
> > > > > testing?
> > > > > > > > >
> > > > > > > > > Interesting. My parser seems to be more lenient. This
> > > should
> > > > > be
> > > > > > a
> > > > > > > > > simple matter to fix, though (famous last words, I
> know).
> > > If
> > > > > you
> > > > > > > edit
> > > > > > > > > the
> > > $GLOBUS_LOCATION/lib/perl/Globus/GRAM/ExtensionsHandler.pm
> > > > > > file
> > > > > > > > and
> > > > > > > > > search "new XML::Parser", you should be able to add a
> hash
> > > > > > parameter
> > > > > > > > to
> > > > > > > > > turn off namespace processing. Change the following:
> > > > > > > > >
> > > > > > > > > my $extParser = new XML::Parser(Handlers => {
> > > > > > > > > Start => sub { $self->StartTag(@_); },
> > > > > > > > > End => sub { $self->EndTag(@_); },
> > > > > > > > > Char => sub { $self->Char(@_); } });
> > > > > > > > >
> > > > > > > > > to this:
> > > > > > > > >
> > > > > > > > > my $extParser = new XML::Parser(
> > > > > > > > > Namespaces => 0,
> > > > > > > > > Handlers => {
> > > > > > > > > Start => sub { $self->StartTag(@_); },
> > > > > > > > > End => sub { $self->EndTag(@_); },
> > > > > > > > > Char => sub { $self->Char(@_); } });
> > > > > > > > >
> > > > > > > > > Either that or just put a bogus xmlns attribute in the
> > > > > extensions
> > > > > > > > start
> > > > > > > > > tag:
> > > > > > > > >
> > > > > > > > > <extensions xmlns:condor="bogus_condor_namespace">
> > > > > > > > > <condor:should_transfer_files>...
> > > > > > > > > . . .
> > > > > > > > > </extensions>
> > > > > > > > >
> > > > > > > > > Let me know how it goes.
> > > > > > > > >
> > > > > > > > > Peter
> > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > Here I am pasting the error and the XML Job
> description.
> > > > > > > > > >
> > > > > > > > > > [senthil@gis14 GridTest]$ globusrun-ws -submit -F
> hostname
> > > > -f
> > > > > > > > > > multi_condor_test1.xml
> > > > > > > > > > globusrun-ws: Error loading rsl
> > > > > > > > > > globus_soap_message_module: Deserialization of
> > > > > > > > > > {http://www.w3.org/2001/XMLSchema}string failed.
> > > > > > > > > > globus_soap_message_module: XML parser failed to get
> the
> > > > next
> > > > > > node
> > > > > > > > in
> > > > > > > > > > the message
> > > > > > > > > > globus_soap_message_module: Parser Failed Namespace
> prefix
> > > > > > condor
> > > > > > > on
> > > > > > > > > > should_transfer_files is not defined
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > <?xml version="1.0" encoding="UTF-8"?>
> > > > > > > > > > <multiJob
> > > > > > > > >
> > > xmlns:gram="http://www.globus.org/namespaces/2004/10/gram/job";
> > > > > > > > > >
> > > > > > xmlns:wsa="http://schemas.xmlsoap.org/ws/2004/03/addressing";>
> > > > > > > > > > <factoryEndpoint>
> > > > > > > > > > <wsa:Address>
> > > > > > > > > >
> > > > > > > > >
> https://hostname:8443/wsrf/services/ManagedJobFactoryService
> > > > > > > > > > </wsa:Address>
> > > > > > > > > > <wsa:ReferenceProperties>
> > > > > > > > > > <gram:ResourceID>Multi</gram:ResourceID>
> > > > > > > > > > </wsa:ReferenceProperties>
> > > > > > > > > > </factoryEndpoint>
> > > > > > > > > > <directory>${GLOBUS_LOCATION}</directory>
> > > > > > > > > > <count>1</count>
> > > > > > > > > >
> > > > > > > > > > <job>
> > > > > > > > > > <factoryEndpoint>
> > > > > > > > > > <wsa:Address>
> > > > > > > > > >
> > > > > > > > > >
> > > https://hostname:8443/wsrf/services/ManagedJobFactoryService
> > > > > > > > > > </wsa:Address>
> > > > > > > > > > <wsa:ReferenceProperties>
> > > > > > > > > >
> <gram:ResourceID>Condor</gram:ResourceID>
> > > > > > > > > > </wsa:ReferenceProperties>
> > > > > > > > > > </factoryEndpoint>
> > > > > > > > > >
> > > > > <executable>/home/senthil/GridTest/sh_loop</executable>
> > > > > > > > > > <argument>60</argument>
> > > > > > > > > > <stdout>${GLOBUS_USER_HOME}/stdout.j3</stdout>
> > > > > > > > > > <stderr>${GLOBUS_USER_HOME}/stderr.j3</stderr>
> > > > > > > > > > <count>1</count>
> > > > > > > > > > <extensions>
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > >
> > > > > >
> > > >
> <condor:should_transfer_files>IF_NEEDED</condor:should_transfer_files>
> > > > > > > > > >
> > > > > > > > >
> > > > <condor:WhenToTransferFiles>ON_EXIT</condor:WhenToTransferFiles>
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> <condor:transfer_output_file>${GLOBUS_USER_HOME}/stdout.j3</condor:trans
> > > > > > > > > > fer_output_file>
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> <condor:transfer_output_file>${GLOBUS_USER_HOME}/stderr.j3</condor:trans
> > > > > > > > > > fer_output_file>
> > > > > > > > > > </extensions>
> > > > > > > > > > </job>
> > > > > > > > > >
> > > > > > > > > > <job>
> > > > > > > > > > <factoryEndpoint>
> > > > > > > > > > <wsa:Address>
> > > > > > > > > >
> > > > > > > > > >
> > > https://hostname:8443/wsrf/services/ManagedJobFactoryService
> > > > > > > > > > </wsa:Address>
> > > > > > > > > > <wsa:ReferenceProperties>
> > > > > > > > > >
> <gram:ResourceID>Condor</gram:ResourceID>
> > > > > > > > > > </wsa:ReferenceProperties>
> > > > > > > > > > </factoryEndpoint>
> > > > > > > > > >
> > > > > <executable>/home/senthil/GridTest/sh_loop</executable>
> > > > > > > > > > <argument>120</argument>
> > > > > > > > > > <stdout>${GLOBUS_USER_HOME}/stdout.j4</stdout>
> > > > > > > > > > <stderr>${GLOBUS_USER_HOME}/stderr.j4</stderr>
> > > > > > > > > > <count>1</count>
> > > > > > > > > > </job>
> > > > > > > > > >
> > > > > > > > > > </multiJob>
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > >
> > > > > > > > > > -----Original Message-----
> > > > > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx]
> > > > > > > > > > Sent: Wednesday, September 28, 2005 12:05 PM
> > > > > > > > > > To: Natarajan, Senthil
> > > > > > > > > > Cc: discuss@xxxxxxxxxx
> > > > > > > > > > Subject: RE: [Globus-discuss] Problem in Job
> Submission to
> > > > > > Condor
> > > > > > > > > > through GT4
> > > > > > > > > >
> > > > > > > > > > On Wed, 2005-09-28 at 11:36 -0400, Natarajan, Senthil
> > > wrote:
> > > > > > > > > > > Peter,
> > > > > > > > > > > I tried with different combinations the package
> > > > > > > > > > > globus_wsrf_gram_service_java-0.78.0 went through.
> > > > > > > > > > >
> > > > > > > > > > > But still other packages are giving problem; the
> problem
> > > > is
> > > > > it
> > > > > > > > > > couldn't
> > > > > > > > > > > find the file Doxyfile.in under the directory
> doxygen.
> > > > > > > (Physically
> > > > > > > > I
> > > > > > > > > > > couldn't find the file in that directory). Could you
> > > > please
> > > > > > help
> > > > > > > > me
> > > > > > > > > on
> > > > > > > > > > > this, I am kind of stuck.
> > > > > > > > > >
> > > > > > > > > > Yeah, this is my fault. I wasn't creating source
> packages
> > > > > > > > correctly.
> > > > > > > > > I
> > > > > > > > > > talked to the GPT gurus and created a new set of
> source
> > > > > packages
> > > > > > > > that
> > > > > > > > > > should work. I refreshed the downloads page so you
> should
> > > > see
> > > > > > the
> > > > > > > > > > section in question dated September 28. Try those
> > > packages.
> > > > > > > Again,
> > > > > > > > > > sorry for the inconvenience. It's a learning process
> for
> > > me
> > > > > > too.
> > > > > > > :)
> > > > > > > > > >
> > > > > > > > > > Peter
> > > > > > > > > >
> > > > > > > > > > > Thanks,
> > > > > > > > > > > Senthil
> > > > > > > > > > >
> > > > > > > > > > > Here is the error msg.
> > > > > > > > > > >
> > > > > > > > > > > [globus@gis14 globus-4.0.1]$ gpt-build
> > > > > > > > > > > globus_scheduler_event_generator-1.0.1-src.tar.gz
> > > gcc32dbg
> > > > > > > > > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR
> > > > > > > > > > > globus_scheduler_event_generator
> > > > > > > > > > > gpt-build ====> Changing to
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_scheduler_event_gener
> > > > > > > > > > > ator-1.0.1/
> > > > > > > > > > > gpt-build ====> BUILDING FLAVOR gcc32dbg
> > > > > > > > > > >
> GLOBUS_LOCATION=/usr/local/GridComputing/globus-4.0.1;
> > > > > export
> > > > > > > > > > > GLOBUS_LOCATION; CPP='/usr/bin/gcc -E'; export CPP;
> > > > > > CPPFLAGS='
> > > > > > > > > > > -I/usr/local/GridComputing/globus-4.0.1/include
> > > > > > > > > > >
> > > -I/usr/local/GridComputing/globus-4.0.1/include/gcc32dbg';
> > > > > > > export
> > > > > > > > > > > CPPFLAGS; CFLAGS='-g -Wall'; export CFLAGS;
> LDFLAGS='
> > > > > > > > > > > -L/usr/local/GridComputing/globus-4.0.1/lib'; export
> > > > > LDFLAGS;
> > > > > > > > > > > CXX='/usr/bin/g++'; export CXX; CXXCPP='/usr/bin/g++
> > > -E';
> > > > > > export
> > > > > > > > > > CXXCPP;
> > > > > > > > > > > CXXFLAGS='-g '; export CXXFLAGS;
> F77='/usr/bin/g77';
> > > > export
> > > > > > > F77;
> > > > > > > > > > > AR='/usr/bin/ar'; export AR; ARFLAGS='ruv'; export
> > > > ARFLAGS;
> > > > > > > > > > > RANLIB='/usr/bin/ranlib'; export RANLIB;
> NM='/usr/bin/nm
> > > > > -B';
> > > > > > > > export
> > > > > > > > > > NM;
> > > > > > > > > > > CC='/usr/bin/gcc'; export CC;
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_scheduler_event_gener
> > > > > > > > > > > ator-1.0.1//configure --with-flavor=gcc32dbg
> > > > > > > > > > > checking whether to enable maintainer-specific
> portions
> > > of
> > > > > > > > > > Makefiles...
> > > > > > > > > > > no
> > > > > > > > > > > Dependencies Complete
> > > > > > > > > > > checking for a BSD-compatible install...
> > > /usr/bin/install
> > > > -c
> > > > > > > > > > > checking whether build environment is sane... yes
> > > > > > > > > > > checking for gawk... gawk
> > > > > > > > > > > checking whether make sets $(MAKE)... yes
> > > > > > > > > > > configure: creating ./config.status
> > > > > > > > > > > config.status: creating Makefile
> > > > > > > > > > > config.status: creating pkgdata/Makefile
> > > > > > > > > > > config.status: creating pkgdata/pkg_data_src.gpt
> > > > > > > > > > > config.status: creating doxygen/Makefile
> > > > > > > > > > > config.status: creating doxygen/Doxyfile
> > > > > > > > > > > config.status: error: cannot find input file:
> > > > > > > doxygen/Doxyfile.in
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > [globus@gis14 globus-4.0.1]$ gpt-build
> > > > > > > > > > > globus_gram_job_manager-7.6.2-src.tar.gz gcc32dbg
> > > > > > > > > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR
> > > > > > > > > > globus_gram_job_manager
> > > > > > > > > > > ERROR: The following packages are missing
> > > > > > > > > > > Package globus_gram_job_manager-ANY-src is missing
> > > > > > > > > > > pgm_link-globus_scheduler_event_generator-ANY-dev
> > > > > > > > > > > Package globus_gram_job_manager-ANY-src is missing
> > > > > > > > > > > compile-globus_scheduler_event_generator-ANY-dev
> > > > > > > > > > >
> > > > > > > > > > > Died at
> > > > /usr/local/GridComputing/software/GPT/sbin/gpt-build
> > > > > > > line
> > > > > > > > > 362,
> > > > > > > > > > > <FILE> line 104566.
> > > > > > > > > > >
> > > > > > > > > > > [globus@gis14 globus-4.0.1]$ gpt-build
> > > > > > > > > > >
> globus_gram_job_manager_setup_condor-2.8.1-src.tar.gz
> > > > > gcc32dbg
> > > > > > > > > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR
> > > > > > > > > > > globus_gram_job_manager_setup_condor
> > > > > > > > > > > gpt-build ====> Changing to
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager_setu
> > > > > > > > > > > p_condor-2.8.1/
> > > > > > > > > > > gpt-build ====> BUILDING
> > > > > globus_gram_job_manager_setup_condor
> > > > > > > > > > >
> GLOBUS_LOCATION=/usr/local/GridComputing/globus-4.0.1;
> > > > > export
> > > > > > > > > > > GLOBUS_LOCATION;
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager_setu
> > > > > > > > > > > p_condor-2.8.1//configure --with-flavor=
> > > > > > > > > > > checking whether to enable maintainer-specific
> portions
> > > of
> > > > > > > > > > Makefiles...
> > > > > > > > > > > no
> > > > > > > > > > > Warning: package doesn't build with flavors ignored
> > > > > > > > > > > Warning: ignored
> > > > > > > > > > > Dependencies Complete
> > > > > > > > > > > checking for a BSD-compatible install...
> > > /usr/bin/install
> > > > -c
> > > > > > > > > > > checking whether build environment is sane... yes
> > > > > > > > > > > checking for gawk... gawk
> > > > > > > > > > > checking whether make sets $(MAKE)... yes
> > > > > > > > > > > configure: creating ./config.status
> > > > > > > > > > > config.status: creating Makefile
> > > > > > > > > > > config.status: creating pkgdata/Makefile
> > > > > > > > > > > config.status: creating pkgdata/pkg_data_src.gpt
> > > > > > > > > > > config.status: creating doxygen/Doxyfile
> > > > > > > > > > > config.status: error: cannot find input file:
> > > > > > > doxygen/Doxyfile.in
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx]
> > > > > > > > > > > Sent: Tuesday, September 27, 2005 6:38 PM
> > > > > > > > > > > To: Natarajan, Senthil
> > > > > > > > > > > Cc: discuss@xxxxxxxxxx
> > > > > > > > > > > Subject: RE: [Globus-discuss] Problem in Job
> Submission
> > > to
> > > > > > > Condor
> > > > > > > > > > > through GT4
> > > > > > > > > > >
> > > > > > > > > > > I believe I fixed the
> > > globus_wsrf_gram_service_java-0.78.0
> > > > > > > package
> > > > > > > > > > > (replaced the package). I'm still trying to work
> with
> > > the
> > > > > GPT
> > > > > > > > > experts
> > > > > > > > > > > to figure out why the scheduler_event_generator
> package
> > > > > isn't
> > > > > > > > > > > relocatable.
> > > > > > > > > > >
> > > > > > > > > > > Peter
> > > > > > > > > > >
> > > > > > > > > > > On Tue, 2005-09-27 at 16:01 -0400, Natarajan,
> Senthil
> > > > wrote:
> > > > > > > > > > > > Peter,
> > > > > > > > > > > > I am trying to install the packages in the
> following
> > > > order
> > > > > > > > > > > > globus_wsrf_gram_service_java-0.78.0
> > > > > > > > > > > > globus_scheduler_event_generator-1.0.1
> > > > > > > > > > > > before going for the main packages. But I am
> getting
> > > the
> > > > > > > > following
> > > > > > > > > > > > error.
> > > > > > > > > > > > Please let me know am I trying correctly.
> > > > > > > > > > > >
> > > > > > > > > > > > [globus@gis14 globus-4.0.1]$ gpt-build
> > > > > > > > > > > > globus_wsrf_gram_service_java-0.78.0-src.tar.gz
> > > gcc32dbg
> > > > > > > > > > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR
> > > > > > > > > > > > globus_wsrf_gram_service_java
> > > > > > > > > > > > gpt-build ====> Changing to
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav
> > > > > > > > > > > > a-0.78.0/
> > > > > > > > > > > > gpt-build ====> BUILDING
> globus_wsrf_gram_service_java
> > > > > > > > > > > > ant
> > > > > > > -Denv.GLOBUS_LOCATION=/usr/local/GridComputing/globus-4.0.1
> > > > > > > > > > > > Buildfile: build.xml
> > > > > > > > > > > > [taskdef] Could not load definitions from
> resource
> > > > > > > > clovertasks.
> > > > > > > > > It
> > > > > > > > > > > > could not be found.
> > > > > > > > > > > >
> > > > > > > > > > > > initClover:
> > > > > > > > > > > >
> > > > > > > > > > > > init:
> > > > > > > > > > > > [mkdir] Created dir:
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav
> > > > > > > > > > > > a-0.78.0/build
> > > > > > > > > > > > [mkdir] Created dir:
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav
> > > > > > > > > > > > a-0.78.0/build/classes
> > > > > > > > > > > > [mkdir] Created dir:
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav
> > > > > > > > > > > > a-0.78.0/build/lib
> > > > > > > > > > > >
> > > > > > > > > > > > compile:
> > > > > > > > > > > > [javac] Compiling 36 source files to
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav
> > > > > > > > > > > > a-0.78.0/build/classes
> > > > > > > > > > > > [javac]
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> a-0.78.0/src/org/globus/exec/service/job/ManagedJobResourceImpl.java:259
> > > > > > > > > > > > : warning: non-varargs call of varargs method with
> > > > inexact
> > > > > > > > > argument
> > > > > > > > > > > type
> > > > > > > > > > > > for last parameter;
> > > > > > > > > > > > [javac] cast to java.lang.Object for a varargs
> > > call
> > > > > > > > > > > > [javac] cast to java.lang.Object[] for a
> > > non-varargs
> > > > > > call
> > > > > > > > and
> > > > > > > > > to
> > > > > > > > > > > > suppress this warning
> > > > > > > > > > > > [javac] value =
> > > > > > > > > readMethod.invoke(resourceData,
> > > > > > > > > > > > null);
> > > > > > > > > > > > [javac]
> > > > > > > > > > ^
> > > > > > > > > > > > [javac]
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> a-0.78.0/src/org/globus/exec/service/multi/ManagedMultiJobResource.java:
> > > > > > > > > > > > 385: warning: non-varargs call of varargs method
> with
> > > > > > inexact
> > > > > > > > > > argument
> > > > > > > > > > > > type for last parameter;
> > > > > > > > > > > > [javac] cast to java.lang.Object for a varargs
> > > call
> > > > > > > > > > > > [javac] cast to java.lang.Object[] for a
> > > non-varargs
> > > > > > call
> > > > > > > > and
> > > > > > > > > to
> > > > > > > > > > > > suppress this warning
> > > > > > > > > > > > [javac]
> > > > > > subJobDescriptions[index],
> > > > > > > > > > null);
> > > > > > > > > > > > [javac]
> > > > > > > ^
> > > > > > > > > > > > [javac]
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> a-0.78.0/src/org/globus/exec/service/multi/ManagedMultiJobResource.java:
> > > > > > > > > > > > 697: cannot find symbol
> > > > > > > > > > > > [javac] symbol : variable
> > > SUBJOB_UNSUBSCRIBE_ERROR
> > > > > > > > > > > > [javac] location: class
> > > > > org.globus.exec.utils.Resources
> > > > > > > > > > > > [javac]
> > > > > > > > > > > Resources.SUBJOB_UNSUBSCRIBE_ERROR);
> > > > > > > > > > > > [javac] ^
> > > > > > > > > > > > [javac]
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> a-0.78.0/src/org/globus/exec/service/multi/ManagedMultiJobResource.java:
> > > > > > > > > > > > 857: cannot find symbol
> > > > > > > > > > > > [javac] symbol : variable
> > > > SUBJOB_STUB_SECURITY_ERROR
> > > > > > > > > > > > [javac] location: class
> > > > > org.globus.exec.utils.Resources
> > > > > > > > > > > > [javac]
> > > > > > > > > > > > Resources.SUBJOB_STUB_SECURITY_ERROR);
> > > > > > > > > > > > [javac]
> ^
> > > > > > > > > > > > [javac] Note: Some input files use unchecked
> or
> > > > unsafe
> > > > > > > > > > operations.
> > > > > > > > > > > > [javac] Note: Recompile with -Xlint:unchecked
> for
> > > > > > details.
> > > > > > > > > > > > [javac] 2 errors
> > > > > > > > > > > > [javac] 2 warnings
> > > > > > > > > > > >
> > > > > > > > > > > > BUILD FAILED
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_wsrf_gram_service_jav
> > > > > > > > > > > > a-0.78.0/build.xml:39: Compile failed; see the
> > > compiler
> > > > > > error
> > > > > > > > > output
> > > > > > > > > > > for
> > > > > > > > > > > > details.
> > > > > > > > > > > >
> > > > > > > > > > > > Total time: 15 seconds
> > > > > > > > > > > >
> > > > > > > > > > > > ERROR: Build has failed
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > [globus@gis14 globus-4.0.1]$ gpt-build
> > > > > > > > > > > > globus_scheduler_event_generator-1.0.1-src.tar.gz
> > > > gcc32dbg
> > > > > > > > > > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR
> > > > > > > > > > > > globus_scheduler_event_generator
> > > > > > > > > > > > gpt-build ====> Changing to
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_scheduler_event_gener
> > > > > > > > > > > > ator-1.0.1/
> > > > > > > > > > > > gpt-build ====> BUILDING FLAVOR gcc32dbg
> > > > > > > > > > > >
> GLOBUS_LOCATION=/usr/local/GridComputing/globus-4.0.1;
> > > > > > export
> > > > > > > > > > > > GLOBUS_LOCATION; CPP='/usr/bin/gcc -E'; export
> CPP;
> > > > > > > CPPFLAGS='
> > > > > > > > > > > > -I/usr/local/GridComputing/globus-4.0.1/include
> > > > > > > > > > > >
> > > > -I/usr/local/GridComputing/globus-4.0.1/include/gcc32dbg';
> > > > > > > > export
> > > > > > > > > > > > CPPFLAGS; CFLAGS='-g -Wall'; export CFLAGS;
> > > LDFLAGS='
> > > > > > > > > > > > -L/usr/local/GridComputing/globus-4.0.1/lib';
> export
> > > > > > LDFLAGS;
> > > > > > > > > > > > CXX='/usr/bin/g++'; export CXX;
> CXXCPP='/usr/bin/g++
> > > > -E';
> > > > > > > export
> > > > > > > > > > > CXXCPP;
> > > > > > > > > > > > CXXFLAGS='-g '; export CXXFLAGS;
> F77='/usr/bin/g77';
> > > > > export
> > > > > > > > F77;
> > > > > > > > > > > > AR='/usr/bin/ar'; export AR; ARFLAGS='ruv'; export
> > > > > ARFLAGS;
> > > > > > > > > > > > RANLIB='/usr/bin/ranlib'; export RANLIB;
> > > NM='/usr/bin/nm
> > > > > > -B';
> > > > > > > > > export
> > > > > > > > > > > NM;
> > > > > > > > > > > > CC='/usr/bin/gcc'; export CC;
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_scheduler_event_gener
> > > > > > > > > > > > ator-1.0.1//configure --with-flavor=gcc32dbg
> > > > > > > > > > > > checking whether to enable maintainer-specific
> > > portions
> > > > of
> > > > > > > > > > > Makefiles...
> > > > > > > > > > > > no
> > > > > > > > > > > > Dependencies Complete
> > > > > > > > > > > > checking for a BSD-compatible install...
> > > > /usr/bin/install
> > > > > -c
> > > > > > > > > > > > checking whether build environment is sane... yes
> > > > > > > > > > > > checking for gawk... gawk
> > > > > > > > > > > > checking whether make sets $(MAKE)... yes
> > > > > > > > > > > > configure: creating ./config.status
> > > > > > > > > > > > config.status: creating Makefile
> > > > > > > > > > > > config.status: creating pkgdata/Makefile
> > > > > > > > > > > > config.status: creating pkgdata/pkg_data_src.gpt
> > > > > > > > > > > > config.status: creating doxygen/Makefile
> > > > > > > > > > > > config.status: creating doxygen/Doxyfile
> > > > > > > > > > > > config.status: error: cannot find input file:
> > > > > > > > doxygen/Doxyfile.in
> > > > > > > > > > > >
> > > > > > > > > > > > ERROR: Build has failed
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx]
> > > > > > > > > > > > Sent: Tuesday, September 27, 2005 3:23 PM
> > > > > > > > > > > > To: Natarajan, Senthil
> > > > > > > > > > > > Cc: discuss@xxxxxxxxxx
> > > > > > > > > > > > Subject: RE: [Globus-discuss] Problem in Job
> > > Submission
> > > > to
> > > > > > > > Condor
> > > > > > > > > > > > through GT4
> > > > > > > > > > > >
> > > > > > > > > > > > Hmm, I just downloaded the condor setup package I
> have
> > > > up
> > > > > > > there
> > > > > > > > > now
> > > > > > > > > > to
> > > > > > > > > > > > check it myself and installed it without a
> problem.
> > > Try
> > > > > > > > > downloading
> > > > > > > > > > > > fresh copies of all the packages you need. Just
> for
> > > > > sanity,
> > > > > > > > > here's
> > > > > > > > > > > the
> > > > > > > > > > > > MD5 checksum:
> > > > > > > > > > > >
> > > > > > > > > > > > a37800228817290ccea05399ac986062
> > > > > > > > > > > >
> globus_gram_job_manager_setup_condor-2.8.1-src.tar.gz
> > > > > > > > > > > >
> > > > > > > > > > > > Peter
> > > > > > > > > > > >
> > > > > > > > > > > > On Tue, 2005-09-27 at 13:50 -0400, Natarajan,
> Senthil
> > > > > wrote:
> > > > > > > > > > > > > Peter,
> > > > > > > > > > > > > I downloaded your new package (after bootstrap)
> then
> > > I
> > > > > try
> > > > > > > to
> > > > > > > > > > > install
> > > > > > > > > > > > it
> > > > > > > > > > > > > gave me the following error.
> > > > > > > > > > > > >
> > > > > > > > > > > > > [globus@gis14 globus-4.0.1]$ gpt-build
> > > > > > > > > > > > >
> > > globus_gram_job_manager_setup_condor-2.8.1-src.tar.gz
> > > > > > > gcc32dbg
> > > > > > > > > > > > > gpt-build ====> CHECKING BUILD DEPENDENCIES FOR
> > > > > > > > > > > > > globus_gram_job_manager_setup_condor
> > > > > > > > > > > > > gpt-build ====> Changing to
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager_setu
> > > > > > > > > > > > > p_condor-2.8.1/
> > > > > > > > > > > > > gpt-build ====> BUILDING
> > > > > > > globus_gram_job_manager_setup_condor
> > > > > > > > > > > > >
> > > GLOBUS_LOCATION=/usr/local/GridComputing/globus-4.0.1;
> > > > > > > export
> > > > > > > > > > > > > GLOBUS_LOCATION;
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager_setu
> > > > > > > > > > > > > p_condor-2.8.1//configure --with-flavor=
> > > > > > > > > > > > > checking whether to enable maintainer-specific
> > > > portions
> > > > > of
> > > > > > > > > > > > Makefiles...
> > > > > > > > > > > > > no
> > > > > > > > > > > > > Warning: package doesn't build with flavors
> ignored
> > > > > > > > > > > > > Warning: ignored
> > > > > > > > > > > > > Dependencies Complete
> > > > > > > > > > > > > checking for a BSD-compatible install...
> > > > > /usr/bin/install
> > > > > > -c
> > > > > > > > > > > > > checking whether build environment is sane...
> yes
> > > > > > > > > > > > > checking for gawk... gawk
> > > > > > > > > > > > > checking whether make sets $(MAKE)... yes
> > > > > > > > > > > > > configure: creating ./config.status
> > > > > > > > > > > > > config.status: creating Makefile
> > > > > > > > > > > > > config.status: creating pkgdata/Makefile
> > > > > > > > > > > > > config.status: creating pkgdata/pkg_data_src.gpt
> > > > > > > > > > > > > config.status: creating doxygen/Doxyfile
> > > > > > > > > > > > > config.status: error: cannot find input file:
> > > > > > > > > doxygen/Doxyfile.in
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > I thought of doing ./bootstrap in the source
> > > > directory,
> > > > > it
> > > > > > > > gave
> > > > > > > > > > the
> > > > > > > > > > > > > following error.
> > > > > > > > > > > > >
> > > > > > > > > > > > > [globus@gis14
> > > > > globus_gram_job_manager_setup_condor-2.8.1]$
> > > > > > > > > > > ./bootstrap
> > > > > > > > > > > > > installing globus_automake_pre link
> > > > > > > > > > > > > installing globus_automake_post link
> > > > > > > > > > > > > installing globus_automake_pre_top link
> > > > > > > > > > > > > installing globus_automake_post_top link
> > > > > > > > > > > > > running aclocal -I
> > > > > > > > > > > > >
> > > > > /usr/local/GridComputing/globus-4.0.1/share/globus_aclocal
> > > > > > > -I
> > > > > > > > > > > > >
> > > > /usr/local/GridComputing/software/GPT/share/gpt/aclocal
> > > > > > > > > > > > > running libtoolize --copy --force
> > > > > > > > > > > > > running automake --copy -add-missing --foreign
> > > > > > > > > > > > > configure.in: installing `./mkinstalldirs'
> > > > > > > > > > > > > running gpt_create_automake_rules
> --excludes=doxygen
> > > > > > > > > > > > > running autoconf
> > > > > > > > > > > > > Can't locate object method "path" via package
> > > > > > > > > "Autom4te::Request"
> > > > > > > > > > at
> > > > > > > > > > > > > /usr/bin/autom4te line 81.
> > > > > > > > > > > > >
> > > > > > > > > > > > > ERROR: bootstrap failed!
> > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx]
> > > > > > > > > > > > > Sent: Tuesday, September 27, 2005 1:18 PM
> > > > > > > > > > > > > To: Natarajan, Senthil
> > > > > > > > > > > > > Cc: discuss@xxxxxxxxxx
> > > > > > > > > > > > > Subject: RE: [Globus-discuss] Problem in Job
> > > > Submission
> > > > > to
> > > > > > > > > Condor
> > > > > > > > > > > > > through GT4
> > > > > > > > > > > > >
> > > > > > > > > > > > > This one's my fault. I forgot to bootstrap the
> > > source
> > > > > > > package
> > > > > > > > > > > before
> > > > > > > > > > > > I
> > > > > > > > > > > > > put it up on the web site. Either download the
> > > > package
> > > > > > > again
> > > > > > > > (I
> > > > > > > > > > > > > replaced the package file) or untar the package
> and
> > > > > > execute
> > > > > > > > > > > > ./bootstrap
> > > > > > > > > > > > > in the source package directory. You can then
> type
> > > > > > > gpt-build
> > > > > > > > > > > <flavor>
> > > > > > > > > > > > > in the package directory.
> > > > > > > > > > > > >
> > > > > > > > > > > > > I'm looking into the other package version
> problem.
> > > > The
> > > > > > > major
> > > > > > > > > > > version
> > > > > > > > > > > > > number for the scheduler_event_generator package
> in
> > > > the
> > > > > > > trunk
> > > > > > > > > got
> > > > > > > > > > > > bumped
> > > > > > > > > > > > > and I'm not sure why. It might be as simple as
> > > > lowering
> > > > > > the
> > > > > > > > > major
> > > > > > > > > > > > > version requirement in the job_manager package
> > > > > dependency,
> > > > > > > but
> > > > > > > > I
> > > > > > > > > > > want
> > > > > > > > > > > > to
> > > > > > > > > > > > > make sure.
> > > > > > > > > > > > >
> > > > > > > > > > > > > Peter
> > > > > > > > > > > > >
> > > > > > > > > > > > > On Tue, 2005-09-27 at 11:08 -0400, Natarajan,
> > > Senthil
> > > > > > wrote:
> > > > > > > > > > > > > > Peter,
> > > > > > > > > > > > > > I tried to install the package
> > > > > > > > > > > > > > globus_gram_job_manager_setup_condor-2.8.1, it
> > > also
> > > > > gave
> > > > > > > the
> > > > > > > > > > > > following
> > > > > > > > > > > > > > error.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > [globus@gis14 globus-4.0.1]$ gpt-build
> > > > > > > > > > > > > >
> > > > globus_gram_job_manager_setup_condor-2.8.1-src.tar.gz
> > > > > > > > gcc32dbg
> > > > > > > > > > > > > > gpt-build ====> CHECKING BUILD DEPENDENCIES
> FOR
> > > > > > > > > > > > > > globus_gram_job_manager_setup_condor
> > > > > > > > > > > > > > gpt-build ====> Changing to
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager_setu
> > > > > > > > > > > > > > p_condor-2.8.1/
> > > > > > > > > > > > > > gpt-build ====> BUILDING
> > > > > > > > globus_gram_job_manager_setup_condor
> > > > > > > > > > > > > >
> > > > GLOBUS_LOCATION=/usr/local/GridComputing/globus-4.0.1;
> > > > > > > > export
> > > > > > > > > > > > > > GLOBUS_LOCATION;
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager_setu
> > > > > > > > > > > > > > p_condor-2.8.1//configure --with-flavor=
> > > > > > > > > > > > > > sh: line 1:
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_gram_job_manager_setu
> > > > > > > > > > > > > > p_condor-2.8.1//configure: No such file or
> > > directory
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > ERROR: Build has failed
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Please let me know is either the package is
> > > missing
> > > > > > > > something
> > > > > > > > > or
> > > > > > > > > > I
> > > > > > > > > > > > am
> > > > > > > > > > > > > > not updating correctly.
> > > > > > > > > > > > > > Thanks,
> > > > > > > > > > > > > > Senthil
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > > From: Natarajan, Senthil
> > > > > > > > > > > > > > Sent: Tuesday, September 27, 2005 10:22 AM
> > > > > > > > > > > > > > To: 'Peter G Lane'
> > > > > > > > > > > > > > Cc: discuss@xxxxxxxxxx
> > > > > > > > > > > > > > Subject: RE: [Globus-discuss] Problem in Job
> > > > > Submission
> > > > > > to
> > > > > > > > > > Condor
> > > > > > > > > > > > > > through GT4
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Peter,
> > > > > > > > > > > > > > As you mentioned, here I am trying to build
> the
> > > > > package
> > > > > > > from
> > > > > > > > > Sep
> > > > > > > > > > > > 23rd
> > > > > > > > > > > > > > (globus_gram_job_manager-7.6.2) first and then
> the
> > > > > > package
> > > > > > > > > > > > > > globus_gram_job_manager_setup_condor-2.8.1
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > But I am getting this error in the Sep 23rd
> > > package
> > > > > > > itself,
> > > > > > > > am
> > > > > > > > > I
> > > > > > > > > > > > > missing
> > > > > > > > > > > > > > something? I have this gpt
> (gpt-3.2autotools2004)
> > > > and
> > > > > > > > > > Globus4.0.1
> > > > > > > > > > > > > > version.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > [globus@gis14 globus-4.0.1]$ gpt-build
> > > > > > > > > > > > globus_gram_job_manager-7.6.2-
> > > > > > > > > > > > > > src.tar.gz gcc32dbg
> > > > > > > > > > > > > > gpt-build ====> Changing to
> > > > > > > > > > > > > >
> > > > > > > >
> /usr/local/GridComputing/globus-4.0.1/BUILD/globus_core-4.26/
> > > > > > > > > > > > > > gpt-build ====> BUILDING FLAVOR gcc32dbg
> > > > > > > > > > > > > > gpt-build ====> Changing to
> > > > > > > > > > > > > /usr/local/GridComputing/globus-4.0.1/BUILD
> > > > > > > > > > > > > > gpt-build ====> REMOVING empty package
> > > > > > > > > > > > globus_core-gcc32dbg-pgm_static
> > > > > > > > > > > > > > gpt-build ====> REMOVING empty package
> > > > > > > > > globus_core-noflavor-doc
> > > > > > > > > > > > > > gpt-build ====> CHECKING BUILD DEPENDENCIES
> FOR
> > > > > > > > > > > > > globus_gram_job_manager
> > > > > > > > > > > > > > ERROR: The following packages are missing
> > > > > > > > > > > > > > Package
> > > > > > pgm_link-globus_scheduler_event_generator-ANY-dev
> > > > > > > > > > version
> > > > > > > > > > > > 0.3
> > > > > > > > > > > > > is
> > > > > > > > > > > > > > incompatible with
> globus_gram_job_manager-ANY-src
> > > > > > > > > > > > > > Package
> > > > > compile-globus_scheduler_event_generator-ANY-dev
> > > > > > > > > version
> > > > > > > > > > > 0.3
> > > > > > > > > > > > > is
> > > > > > > > > > > > > > incompatible with
> globus_gram_job_manager-ANY-src
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Died at
> > > > > > > /usr/local/GridComputing/software/GPT/sbin/gpt-build
> > > > > > > > > > line
> > > > > > > > > > > > 362,
> > > > > > > > > > > > > > <FILE> line 105362.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx]
> > > > > > > > > > > > > > Sent: Monday, September 26, 2005 5:54 PM
> > > > > > > > > > > > > > To: Natarajan, Senthil
> > > > > > > > > > > > > > Cc: discuss@xxxxxxxxxx
> > > > > > > > > > > > > > Subject: RE: [Globus-discuss] Problem in Job
> > > > > Submission
> > > > > > to
> > > > > > > > > > Condor
> > > > > > > > > > > > > > through GT4
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > On Mon, 2005-09-26 at 15:32 -0400, Natarajan,
> > > > Senthil
> > > > > > > wrote:
> > > > > > > > > > > > > > > Hi Peter,
> > > > > > > > > > > > > > > I am seeing the extensions for
> > > > > "transfer_input_file",
> > > > > > > > > > similarly
> > > > > > > > > > > > does
> > > > > > > > > > > > > > it
> > > > > > > > > > > > > > > has the "transfer_out_file" extension also
> in
> > > > order
> > > > > to
> > > > > > > > > > transfer
> > > > > > > > > > > > the
> > > > > > > > > > > > > > > output back.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > No, but I just put up a new update package
> > > > > > > > > > > > > > (globus_gram_job_manager_setup_condor-2.8.1)
> that
> > > > has
> > > > > > > > support
> > > > > > > > > > for
> > > > > > > > > > > > that
> > > > > > > > > > > > > > one.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > To install the update package, do I need to
> > > > compile
> > > > > > > using
> > > > > > > > > the
> > > > > > > > > > > > > Makefile
> > > > > > > > > > > > > > > and Install, and this will update only the
> > > condor
> > > > > part
> > > > > > > > > right?
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > All you should have to do is the following:
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > gpt-build <package file name> <flavor>
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > For example:
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > gpt-build
> > > > > > > > > globus_gram_job_manager_setup_condor-2.8.1-src.tar.gz
> > > > > > > > > > > > > gcc32dbg
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Note that on the download page it says that it
> > > > > requires
> > > > > > > one
> > > > > > > > of
> > > > > > > > > > the
> > > > > > > > > > > > > > packages from September 23rd
> > > > > > > > (globus_gram_job_manager-7.6.2).
> > > > > > > > > > > Make
> > > > > > > > > > > > > sure
> > > > > > > > > > > > > > to get that one too.
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > Peter
> > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Actually I did added the two extensions
> > > > > > > > > > > > > > > print SCRIPT_FILE "should_transfer_files =
> > > > > > IF_NEEDED\n";
> > > > > > >
> > > > > > > > > > > > > > > print SCRIPT_FILE "WhenToTransferOutput =
> > > > > > ON_EXIT\n\n";
> > > > > > > in
> > > > > > > > > > this
> > > > > > > > > > > > file
> > > > > > > > > > > > > > > ./lib/perl/Globus/GRAM/JobManager/condor.pm
> > > > > > > > > > > > > > > in order to get the job execute in condor
> pool
> > > > > > > (previously
> > > > > > > > I
> > > > > > > > > > had
> > > > > > > > > > > > > > problem
> > > > > > > > > > > > > > > in executing the job).
> > > > > > > > > > > > > > > Please let me know.
> > > > > > > > > > > > > > > Thanks,
> > > > > > > > > > > > > > > Senthil
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > -----Original Message-----
> > > > > > > > > > > > > > > From: Peter G Lane [mailto:lane@xxxxxxxxxxx]
>
> > > > > > > > > > > > > > > Sent: Monday, September 26, 2005 2:46 PM
> > > > > > > > > > > > > > > To: Natarajan, Senthil
> > > > > > > > > > > > > > > Cc: discuss@xxxxxxxxxx
> > > > > > > > > > > > > > > Subject: Re: [Globus-discuss] Problem in Job
> > > > > > Submission
> > > > > > > to
> > > > > > > > > > > Condor
> > > > > > > > > > > > > > > through GT4
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > The Condor adapter doesn't automatically do
> > > this.
> > > > > > We've
> > > > > > > > > added
> > > > > > > > > > > > > support
> > > > > > > > > > > > > > > in update packages for extensions to the job
> > > > > > description
> > > > > > > > > that
> > > > > > > > > > > will
> > > > > > > > > > > > > > allow
> > > > > > > > > > > > > > > you to set these parameters. See the
> Bugzilla
> > > > entry
> > > > > > > about
> > > > > > > > > this
> > > > > > > > > > > > here:
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > http://bugzilla.globus.org/bugzilla/show_bug.cgi?id=3773
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > Peter
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > On Mon, 2005-09-26 at 13:12 -0400,
> Natarajan,
> > > > > Senthil
> > > > > > > > wrote:
> > > > > > > > > > > > > > > > Hi,
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > I am trying to submit a XML Job
> description to
> > > > the
> > > > > > > > Globus,
> > > > > > > > > > > > Globus
> > > > > > > > > > > > > in
> > > > > > > > > > > > > > > > turn submits the job to the Condor.
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > Condor executes the job but it is not
> copying
> > > > back
> > > > > > the
> > > > > > > > > > output
> > > > > > > > > > > > > file.
> > > > > > > > > > > > > > > > But if try to submit the job directly to
> > > condor
> > > > > > pool,
> > > > > > > it
> > > > > > > > > > > copies
> > > > > > > > > > > > > the
> > > > > > > > > > > > > > > > output file back to the specified
> directory.
> > > > Could
> > > > > > any
> > > > > > > > one
> > > > > > > > > > > > please
> > > > > > > > > > > > > > help
> > > > > > > > > > > > > > > > me on this how to get the output file back
> in
> > > > the
> > > > > > > > > specified
> > > > > > > > > > > > > > directory.
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > Thanks,
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > Senthil
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > Here is the XML Job description.
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <?xml version="1.0" encoding="UTF-8"?>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <multiJob
> > > > > > > > > > > > > > > >
> > > > > > > > > >
> > > > xmlns:gram="http://www.globus.org/namespaces/2004/10/gram/job";
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > xmlns:wsa="http://schemas.xmlsoap.org/ws/2004/03/addressing";>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <factoryEndpoint>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <wsa:Address>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > > > > >
> > > > > > >
> > > > > >
> > > > >
> > > >
> > >
> https://gis14.exp.sis.pitt.edu:8443/wsrf/services/ManagedJobFactoryServi
> > > > > > > > > > > > > > > ce
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > </wsa:Address>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <wsa:ReferenceProperties>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > <gram:ResourceID>Multi</gram:ResourceID>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > </wsa:ReferenceProperties>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > </factoryEndpoint>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> <directory>${GLOBUS_LOCATION}</directory>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <count>1</count>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <job>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <factoryEndpoint>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <wsa:Address>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > >
> https://hostname:8443/wsrf/services/ManagedJobFactoryService
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > </wsa:Address>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <wsa:ReferenceProperties>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > <gram:ResourceID>Condor</gram:ResourceID>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > </wsa:ReferenceProperties>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > </factoryEndpoint>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > >
> <executable>/home/senthil/GridTest/sh_loop</executable>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <argument>60</argument>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > <stdout>${GLOBUS_USER_HOME}/stdout.j3</stdout>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > <stderr>${GLOBUS_USER_HOME}/stderr.j3</stderr>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <count>1</count>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > </job>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <job>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <factoryEndpoint>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <wsa:Address>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > https://
> > > > > > > > > > > > > > > >
> > > > > hostname:8443/wsrf/services/ManagedJobFactoryService
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > </wsa:Address>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <wsa:ReferenceProperties>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <gram:ResourceID>Condor</gram:ResourceID>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > </wsa:ReferenceProperties>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > </factoryEndpoint>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > >
> <executable>/home/senthil/GridTest/sh_loop</executable>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <argument>120</argument>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > <stdout>${GLOBUS_USER_HOME}/stdout.j4</stdout>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > <stderr>${GLOBUS_USER_HOME}/stderr.j4</stderr>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > <count>1</count>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > </job>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > > </multiJob>
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > >
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > > > -
> > > > > > > > > > > > > > > To Unsubscribe: send mail to
> > > majordomo@xxxxxxxxxx
> > > > > > > > > > > > > > > with "unsubscribe discuss" in the body of
> the
> > > > > message
> > > > > > > > > > > > > > >
> > > > > > > > > > > > > >
> > > > > > > > > > > > >
> > > > > > > > > > > >
> > > > > > > > > > >
> > > > > > > > > >
> > > > > > > > >
> > > > >
Attachment:
smime.p7s
Description: S/MIME cryptographic signature