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Re: [DynInst_API:] Building Dyninst 8.2 on SGI ICE - issue

Date: Fri, 03 Oct 2014 11:47:07 -0500
From: Jim Galarowicz <jeg@xxxxxxxxxxxxx>
Subject: Re: [DynInst_API:] Building Dyninst 8.2 on SGI ICE - issue 
Hi Bill,
I'm running into this problem again with the release dyninst-8.2 sources on the ORNL Titan Cray platform.
[ 6%] Building CXX object common/CMakeFiles/common.dir/src/addrtranslate-auxv.C.o [ 6%] Building CXX object common/CMakeFiles/common.dir/src/addrtranslate-linux.C.o 
Linking CXX shared library libcommon.so
/usr/bin/ld: /lustre/atlas/proj-shared/csc103/jgalaro/krellroot_v2.1u5/lib64/libiberty.a(cplus-dem.o): relocation R_X86_64_32S against `_sch_istable' can not be used when making a shared object; recompile with -fPIC /lustre/atlas/proj-shared/csc103/jgalaro/krellroot_v2.1u5/lib64/libiberty.a: could not read symbols: Bad value 
collect2: error: ld returned 1 exit status
make[2]: *** [common/libcommon.so.8.2.0] Error 1
make[1]: *** [common/CMakeFiles/common.dir/all] Error 2
make: *** [all] Error 2
In dyninst-8.2.0/dyninstAPI_RT the CMakeLists.txt has these references, but there doesn't appear to be a way to turn the 32 bit build off w/o creating a patch. 

CMakeLists.txt:set (SRC_LIST_mabi ${SRC_LIST} ${SRC_LIST_i386})
CMakeLists.txt:set (SRC_LIST_mabi ${SRC_LIST} ${SRC_LIST_ppc32})
CMakeLists.txt:if (SRC_LIST_mabi)
CMakeLists.txt:add_library (dyninstAPI_RT_m32 SHARED ${SRC_LIST_mabi})
CMakeLists.txt:add_library (dyninstAPI_RT_m32_static STATIC ${SRC_LIST_mabi}) 

Is there a way and I'm missing it?

Thanks,
Jim G


On 03/26/2014 02:37 PM, Bill Williams wrote:

On 03/26/2014 01:36 PM, Jim Galarowicz wrote:

Hi all,
If I do a module purge, that apparently gets rid of the intel library business with "as". 
However, now I've arrived at another issue.

Does this version of Dyninst honor the
       make SKIP_BUILD_RTLIB_32=1
variable? It doesn't look like it. I searched for CMAKE variables with SKIP in them but didn't see any. 

Or else I could build my own binutils with fPIC.

Is there a way to turn off the 32 bit generation with CMAKE?
If you poke at the RTlib's CMakeLists.txt, you'll see that we disable 32-bit generation if a) a compile test of some stripe fails, or b) we're on BlueGene. As an intermediate step, you can throw in an additional clause of "or we told you not to build this".
It is on my list (though not next on my list) to poke at the compile test there and see if I can discern why it is insufficient to actually detect whether we can/should build a 32-bit runtime. Anyone who has/gets any insight there, I'd love to hear it... 

--bw


Thanks,
Jim G



Build dyninst? <y/n>


Build-RPM command-line argument #1 = dyninst-8.2
Build-RPM command-line argument #2 =
Build-RPM command-line argument #3 =

DEBUG: Setting machine to uname: spirit01
RPM working directory: spirit01
Environment variable KRELL_ROOT_PREFIX is set
Environment variable KRELL_ROOT_PREFIX is set to /home/galarowi/krellroot_v2.1u3 
error: Macro %target_prefix has empty body
error: Macro %target_prefix has empty body
Executing(%prep): /bin/sh -e /home/galarowi/OpenSpeedShop_ROOT/INSTALL/spirit01/rpm-tmp.vognqG 
+ umask 022
+ cd /home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01
+ LANG=C
+ export LANG
+ unset DISPLAY
+ '[' -d dyninst-8.2 ']'
+ rm -fr dyninst-8.2
+ '[' '!' -z ']'
+ '[' '!' -z ']'
+ '[' -d /home/galarowi/krellroot_v2.1u3 ']'
+ '[' -d /home/galarowi/krellroot_v2.1u3/include -a -f /home/galarowi/krellroot_v2.1u3/include/boost/shared_ptr.hpp ']' 
+ '[' -d /home/galarowi/krellroot_v2.1u3 ']'
+ '[' -f /home/galarowi/krellroot_v2.1u3/boost/shared_ptr.hpp ']'
+ export DYNINST_BOOST_ROOT=
+ DYNINST_BOOST_ROOT=
+ '[' '!' -z ']'
+ '[' '!' -z ']'
+ '[' '!' -z /home/galarowi/krellroot_v2.1u3 ']'
+ '[' -f /home/galarowi/krellroot_v2.1u3/lib64/libelf.so -o -f /home/galarowi/krellroot_v2.1u3/lib64/libelf.a ']' 
+ '[' '!' -z /home/galarowi/krellroot_v2.1u3 ']'
+ '[' -f /home/galarowi/krellroot_v2.1u3//libelf.so -o -f /home/galarowi/krellroot_v2.1u3//libelf.a ']' 
+ '[' -d /home/galarowi/krellroot_v2.1u3 ']'
+ '[' -f /home/galarowi/krellroot_v2.1u3/lib64/libelf.so -o -f /home/galarowi/krellroot_v2.1u3/lib64/libelf.a ']' 
+ export LIBELFDIR=/usr
+ LIBELFDIR=/usr
+ '[' -f /usr/include/libelf.h ']'
+ export LIBELFINC=/usr/include
+ LIBELFINC=/usr/include
+ '[' '!' -z ']'
+ '[' '!' -z /home/galarowi/krellroot_v2.1u3 ']'
+ '[' -f /home/galarowi/krellroot_v2.1u3/lib64/libdwarf.so -o -f /home/galarowi/krellroot_v2.1u3/lib64/libdwarf.a ']' 
+ export LIBDWARFDIR=/home/galarowi/krellroot_v2.1u3
+ LIBDWARFDIR=/home/galarowi/krellroot_v2.1u3
+ '[' '!' -z /app/wpostool/COST/binutils-2.23 ']'
+ '[' -f /app/wpostool/COST/binutils-2.23/lib64/libiberty.a ']'
+ export LIBIBERTYLIBDIR=/app/wpostool/COST/binutils-2.23/lib64/libiberty.a 
+ LIBIBERTYLIBDIR=/app/wpostool/COST/binutils-2.23/lib64/libiberty.a
+ cd /home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01
+ rm -rf dyninst-8.2
+ /usr/bin/gzip -dc /home/galarowi/OpenSpeedShop_ROOT/SOURCES/dyninst-8.2.tar.gz 
+ /bin/tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd dyninst-8.2
+ /bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch (dyninst-8.2.patch):'
Patch (dyninst-8.2.patch):
+ /bin/cat /home/galarowi/OpenSpeedShop_ROOT/SOURCES/dyninst-8.2.patch
+ /usr/bin/patch -p1 --fuzz=0
(Stripping trailing CRs from patch.)
patching file CMakeLists.txt
+ pwd
/home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2
+ export DYNINST_ROOT=/home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2 + DYNINST_ROOT=/home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2 
+ '[' '%{target_prefix}' == bgp ']'
+ '[' '%{target_prefix}' == bgq ']'
+ CXXFLAGS=-std=c++0x
+ cmake . -DCMAKE_INSTALL_PREFIX=/home/galarowi/OpenSpeedShop_ROOT/BUILDROOT/dyninst-8.2-1.x86_64/home/galarowi/krellroot_v2.1u3 -DINSTALL_LIB_DIR=/home/galarowi/OpenSpeedShop_ROOT/BUILDROOT/dyninst-8.2-1.x86_64/home/galarowi/krellroot_v2.1u3/lib64 -DINSTALL_INCLUDE_DIR=/home/galarowi/OpenSpeedShop_ROOT/BUILDROOT/dyninst-8.2-1.x86_64/home/galarowi/krellroot_v2.1u3/include/dyninst -DCMAKE_PREFIX_PATH=/home/galarowi/OpenSpeedShop_ROOT/BUILDROOT/dyninst-8.2-1.x86_64/home/galarowi/krellroot_v2.1u3 -DCMAKE_BUILD_TYPE=RelWithDebInfo -DLIBDWARF_LIBRARIES=/home/galarowi/krellroot_v2.1u3/lib64 -DLIBDWARF_INCLUDE_DIR=/home/galarowi/krellroot_v2.1u3/include -DLIBELF_LIBRARIES=/usr/lib64 -DLIBELF_INCLUDE_DIR=/usr/include -DPATH_BOOST= -DIBERTY_LIBRARY=/app/wpostool/COST/binutils-2.23/lib64/libiberty.a 
-- The C compiler identification is GNU 4.4.7
-- The CXX compiler identification is GNU 4.4.7
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Attempting to automatically identify platform: x86_64-unknown-linux2.4 
-- Found LibElf: /usr/lib64
-- Found LibDwarf: /home/galarowi/krellroot_v2.1u3/lib64
-- Found libiberty: /app/wpostool/COST/binutils-2.23/lib64/libiberty.a
-- Using libiberty /app/wpostool/COST/binutils-2.23/lib64/libiberty.a
-- Found Thread_Db: /usr/lib64/libthread_db.so
Boost  found.
-- Checking for C++11 flags for GNU
-- Enabling ThreadDB support
-- Set arch and platform based definitions
-- Found g++, enabling -fvisibility=hidden
statusOptions set
statusSet optimization flags
-- Configuring DyninstAPI_RT
-- Configuring RT library
-- The C compiler identification is GNU 4.4.7
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Set arch and platform based definitions
statusOptions set
statusSet optimization flags
-- dyninstAPI RT library SOVERSION: 8.2
-- dyninstAPI RT library LIBVERSION: 8.2.0
-- dyninstAPI output location: /work1/home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2/dyninstAPI_RT/libdyninstAPI_RT.so 
-- Checking for 32-bit runtime library...
-- Performing Test CHECK_RT_LIB_32
-- Performing Test CHECK_RT_LIB_32 - Failed
-- Configuring done
-- Generating done
-- Build files have been written to: /work1/home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2/dyninstAPI_RT 
-- Adding Unix-specific dependencies
-- Added libdwarf_imp and libelf_imp dependencies
-- Configuring done
WARNING: Target "dynElf" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "dynDwarf" requests linking to directory "/home/galarowi/krellroot_v2.1u3/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "symLite" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "symtabAPI" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "symtabAPI" requests linking to directory "/home/galarowi/krellroot_v2.1u3/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "parseAPI" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "parseAPI" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "parseAPI" requests linking to directory "/home/galarowi/krellroot_v2.1u3/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "patchAPI" requests linking to directory "/home/galarowi/krellroot_v2.1u3/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "patchAPI" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "pcontrol" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "stackwalk" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "stackwalk" requests linking to directory "/home/galarowi/krellroot_v2.1u3/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "stackwalk" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "stackwalk" requests linking to directory "/home/galarowi/krellroot_v2.1u3/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "dyninstAPI" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "dyninstAPI" requests linking to directory "/home/galarowi/krellroot_v2.1u3/lib64". Targets may link only to libraries. CMake is dropping the item. WARNING: Target "dyninstAPI" requests linking to directory "/usr/lib64". Targets may link only to libraries. CMake is dropping the item. 
-- Generating done
-- Build files have been written to: /home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2 
+ cd ../..
+ exit 0
Executing(%build): /bin/sh -e /home/galarowi/OpenSpeedShop_ROOT/INSTALL/spirit01/rpm-tmp.GKkyne 
+ umask 022
+ cd /home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01
+ cd dyninst-8.2
+ LANG=C
+ export LANG
+ unset DISPLAY
+ pwd
/home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2
+ make SKIP_BUILD_RTLIB_32=1
Scanning dependencies of target DyninstRT
[  0%] Building DyninstRT
Scanning dependencies of target dyninstAPI_RT
[  3%] Building C object CMakeFiles/dyninstAPI_RT.dir/src/RTcommon.c.o
[ 7%] Building C object CMakeFiles/dyninstAPI_RT.dir/src/RTmemEmulator.c.o 
[ 10%] Building C object CMakeFiles/dyninstAPI_RT.dir/src/RTposix.c.o
[ 14%] Building C object CMakeFiles/dyninstAPI_RT.dir/src/RTlinux.c.o
[ 17%] Building C object CMakeFiles/dyninstAPI_RT.dir/src/RTheap.c.o
[ 21%] Building C object CMakeFiles/dyninstAPI_RT.dir/src/RTheap-linux.c.o 
[ 25%] Building C object CMakeFiles/dyninstAPI_RT.dir/src/RTthread.c.o
[ 28%] Building C object CMakeFiles/dyninstAPI_RT.dir/src/RTspace.S.o
[ 32%] Building C object CMakeFiles/dyninstAPI_RT.dir/src/RTsignal.c.o
[ 35%] Building C object CMakeFiles/dyninstAPI_RT.dir/src/RTstatic_ctors_dtors_begin.c.o [ 39%] Building C object CMakeFiles/dyninstAPI_RT.dir/src/RTstatic_ctors_dtors_end.c.o [ 42%] Building C object CMakeFiles/dyninstAPI_RT.dir/src/RTthread-x86-64.c.o [ 46%] Building C object CMakeFiles/dyninstAPI_RT.dir/src/RTtlsgetaddr-x86.S.o [ 50%] Building C object CMakeFiles/dyninstAPI_RT.dir/src/RTstatic_ctors_dtors-x86.c.o 
Linking C shared library libdyninstAPI_RT.so
[ 50%] Built target dyninstAPI_RT
Scanning dependencies of target dyninstAPI_RT_static
[ 53%] Building C object CMakeFiles/dyninstAPI_RT_static.dir/src/RTcommon.c.o [ 57%] Building C object CMakeFiles/dyninstAPI_RT_static.dir/src/RTmemEmulator.c.o [ 60%] Building C object CMakeFiles/dyninstAPI_RT_static.dir/src/RTposix.c.o [ 64%] Building C object CMakeFiles/dyninstAPI_RT_static.dir/src/RTlinux.c.o [ 67%] Building C object CMakeFiles/dyninstAPI_RT_static.dir/src/RTheap.c.o [ 71%] Building C object CMakeFiles/dyninstAPI_RT_static.dir/src/RTheap-linux.c.o [ 75%] Building C object CMakeFiles/dyninstAPI_RT_static.dir/src/RTthread.c.o [ 78%] Building C object CMakeFiles/dyninstAPI_RT_static.dir/src/RTspace.S.o [ 82%] Building C object CMakeFiles/dyninstAPI_RT_static.dir/src/RTsignal.c.o [ 85%] Building C object CMakeFiles/dyninstAPI_RT_static.dir/src/RTstatic_ctors_dtors_begin.c.o [ 89%] Building C object CMakeFiles/dyninstAPI_RT_static.dir/src/RTstatic_ctors_dtors_end.c.o [ 92%] Building C object CMakeFiles/dyninstAPI_RT_static.dir/src/RTthread-x86-64.c.o [ 96%] Building C object CMakeFiles/dyninstAPI_RT_static.dir/src/RTtlsgetaddr-x86.S.o [100%] Building C object CMakeFiles/dyninstAPI_RT_static.dir/src/RTstatic_ctors_dtors-x86.c.o /home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2/dyninstAPI_RT/src/RTstatic_ctors_dtors-x86.c: In function 'DYNINSTglobal_irel_handler': /home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2/dyninstAPI_RT/src/RTstatic_ctors_dtors-x86.c:96: warning: dereferencing pointer 'rel' does break strict-aliasing rules /home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2/dyninstAPI_RT/src/RTstatic_ctors_dtors-x86.c:95: warning: dereferencing pointer 'rel' does break strict-aliasing rules /home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2/dyninstAPI_RT/src/RTstatic_ctors_dtors-x86.c:94: warning: dereferencing pointer 'rel' does break strict-aliasing rules /home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2/dyninstAPI_RT/src/RTstatic_ctors_dtors-x86.c:92: note: initialized from here /home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2/dyninstAPI_RT/src/RTstatic_ctors_dtors-x86.c:92: note: initialized from here 
Linking C static library libdyninstAPI_RT.a
[100%] Built target dyninstAPI_RT_static
[  0%] Built target DyninstRT
Scanning dependencies of target common
[  0%] Building CXX object common/CMakeFiles/common.dir/src/Ident.C.o
[ 0%] Building CXX object common/CMakeFiles/common.dir/src/string-regex.C.o 
[  0%] Building CXX object common/CMakeFiles/common.dir/src/Timer.C.o
[  0%] Building CXX object common/CMakeFiles/common.dir/src/Types.C.o
[ 1%] Building CXX object common/CMakeFiles/common.dir/src/debugOstream.C.o 
[  1%] Building CXX object common/CMakeFiles/common.dir/src/lprintf.C.o
[  1%] Building CXX object common/CMakeFiles/common.dir/src/pathName.C.o
[  1%] Building CXX object common/CMakeFiles/common.dir/src/Time.C.o
[  1%] Building CXX object common/CMakeFiles/common.dir/src/fraction.C.o
[  1%] Building CXX object common/CMakeFiles/common.dir/src/timing.C.o
[  2%] Building CXX object common/CMakeFiles/common.dir/src/stats.C.o
[ 2%] Building CXX object common/CMakeFiles/common.dir/src/Annotatable.C.o [ 2%] Building CXX object common/CMakeFiles/common.dir/src/MappedFile.C.o 
[  2%] Building CXX object common/CMakeFiles/common.dir/src/sha1.C.o
[ 2%] Building CXX object common/CMakeFiles/common.dir/src/serialize-bin.C.o [ 2%] Building CXX object common/CMakeFiles/common.dir/src/serialize-xml.C.o 
[  3%] Building CXX object common/CMakeFiles/common.dir/src/util.C.o
[  3%] Building CXX object common/CMakeFiles/common.dir/src/Node.C.o
[  3%] Building CXX object common/CMakeFiles/common.dir/src/Graph.C.o
[  3%] Building CXX object common/CMakeFiles/common.dir/src/Edge.C.o
[  3%] Building CXX object common/CMakeFiles/common.dir/src/DOT.C.o
[  4%] Building CXX object common/CMakeFiles/common.dir/src/dyn_regs.C.o
[  4%] Building CXX object common/CMakeFiles/common.dir/src/AST.C.o
[ 4%] Building CXX object common/CMakeFiles/common.dir/src/addrtranslate.C.o 
[  4%] Building CXX object common/CMakeFiles/common.dir/src/arch-x86.C.o
/home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2/common/src/arch-x86.C: In static member function 'static void NS_x86::ia32_instruction::initFlagTable(std::tr1::unordered_map<entryID, NS_x86::flagInfo, std::tr1::hash<entryID>, std::equal_to<entryID>, std::allocator<std::pair<const entryID, NS_x86::flagInfo> > >&)': /home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2/common/src/arch-x86.C:831: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without [ 4%] Building CXX object common/CMakeFiles/common.dir/src/arch-power.C.o [ 4%] Building CXX object common/CMakeFiles/common.dir/src/debug_common.C.o [ 5%] Building CXX object common/CMakeFiles/common.dir/src/VariableLocation.C.o 
[  5%] Building CXX object common/CMakeFiles/common.dir/src/Buffer.C.o
[ 5%] Building CXX object common/CMakeFiles/common.dir/src/linuxKludges.C.o [ 5%] Building CXX object common/CMakeFiles/common.dir/src/timing-linux.C.o [ 5%] Building CXX object common/CMakeFiles/common.dir/src/parseauxv.C.o [ 5%] Building CXX object common/CMakeFiles/common.dir/src/addrtranslate-sysv.C.o [ 6%] Building CXX object common/CMakeFiles/common.dir/src/addrtranslate-auxv.C.o [ 6%] Building CXX object common/CMakeFiles/common.dir/src/addrtranslate-linux.C.o 
Linking CXX shared library libcommon.so
/usr/bin/ld: /app/wpostool/COST/binutils-2.23/lib64/libiberty.a(cplus-dem.o): relocation R_X86_64_32S against `_sch_istable' can not be used when making a shared object; recompile with -fPIC /app/wpostool/COST/binutils-2.23/lib64/libiberty.a: could not read symbols: Bad value 
collect2: ld returned 1 exit status
make[2]: *** [common/libcommon.so.8.2.0] Error 1
make[1]: *** [common/CMakeFiles/common.dir/all] Error 2
make: *** [all] Error 2
error: Bad exit status from /home/galarowi/OpenSpeedShop_ROOT/INSTALL/spirit01/rpm-tmp.GKkyne (%build) 


RPM build errors:
     Macro %target_prefix has empty body
     Macro %target_prefix has empty body
Bad exit status from /home/galarowi/OpenSpeedShop_ROOT/INSTALL/spirit01/rpm-tmp.GKkyne (%build) DYNINST FAILED TO BUILD - TERMINATING BUILD SCRIPT. Please check for errors. sys=spirit01 
[galarowi@spirit01 OpenSpeedShop_ROOT ]$
On Mar 26, 2014, at 10:48 AM, Matthew LeGendre wrote:




On Wed, 26 Mar 2014, Jim Galarowicz wrote:

Hi Matt,
Ok. the web pages don't indicate anything about backend and frontend versions like they do for the Cray machine.
Yes, this machine was both frustrating and poorly documented. Good luck ;)
I'm guessing in order to get the frontend compilers I have to module unload the default Intel compiler module, and then do not load the gcc module. Do you remember if that is what you did?
Yes, I do recall switching compilers with the module command. I think the system was giving me the frontend compilers by default, then I could module load the backend compilers (if I recall correctly).
That gives me the 4.4.7 gnu compilers. I get the same error. I did module unload of the compiler modules.
Looks like it is finding another version of as somewhere else that /usr/bin/as 

GNU assembler version 2.20.51.0.2-5.36.el6 20100205
Copyright 2009 Free Software Foundation, Inc.
This program is free software; you may redistribute it under the terms of 
the GNU General Public License version 3 or later.
This program has absolutely no warranty.
This assembler was configured for a target of `x86_64-redhat-linux'.
[galarowi@spirit01 OpenSpeedShop_ROOT ]$ ldd  /usr/bin/as
    linux-vdso.so.1 =>  (0x00007ffff7fde000)
libopcodes-2.20.51.0.2-5.36.el6.so => /usr/lib64/libopcodes-2.20.51.0.2-5.36.el6.so (0x00007ffff7cd7000) libbfd-2.20.51.0.2-5.36.el6.so => /usr/lib64/libbfd-2.20.51.0.2-5.36.el6.so (0x00007ffff79f0000) 
    libz.so.1 => /lib64/libz.so.1 (0x00007ffff77da000)
    libc.so.6 => /lib64/libc.so.6 (0x00007ffff7447000)
    /lib64/ld-linux-x86-64.so.2 (0x00007ffff7fdf000)
[galarowi@spirit01 OpenSpeedShop_ROOT ]$


[galarowi@spirit01 OpenSpeedShop_ROOT ]$ gcc --version
gcc (GCC) 4.4.7 20120313 (Red Hat 4.4.7-3)
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 

[galarowi@spirit01 OpenSpeedShop_ROOT ]$ which gcc
/usr/bin/gcc
I think you've got the frontend compiler there. An easy test is just to use it to build/run a hello world binary. If it runs, then you've got the front end compiler. 


------- BUILD OUTPUT ------------

Build dyninst? <y/n>


Build-RPM command-line argument #1 = dyninst-8.2
Build-RPM command-line argument #2 =
Build-RPM command-line argument #3 =

DEBUG: Setting machine to uname: spirit01
RPM working directory: spirit01
Environment variable KRELL_ROOT_PREFIX is set
Environment variable KRELL_ROOT_PREFIX is set to /home/galarowi/krellroot_v2.1u3 
error: Macro %target_prefix has empty body
error: Macro %target_prefix has empty body
Executing(%prep): /bin/sh -e /home/galarowi/OpenSpeedShop_ROOT/INSTALL/spirit01/rpm-tmp.6mVk1i 
+ umask 022
+ cd /home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01
+ LANG=C
+ export LANG
+ unset DISPLAY
+ '[' -d dyninst-8.2 ']'
+ rm -fr dyninst-8.2
+ '[' '!' -z ']'
+ '[' '!' -z ']'
+ '[' -d /home/galarowi/krellroot_v2.1u3 ']'
+ '[' -d /home/galarowi/krellroot_v2.1u3/include -a -f /home/galarowi/krellroot_v2.1u3/include/boost/shared_ptr.hpp ']' 
+ '[' -d /home/galarowi/krellroot_v2.1u3 ']'
+ '[' -f /home/galarowi/krellroot_v2.1u3/boost/shared_ptr.hpp ']'
+ export DYNINST_BOOST_ROOT=
+ DYNINST_BOOST_ROOT=
+ '[' '!' -z ']'
+ '[' '!' -z ']'
+ '[' '!' -z /home/galarowi/krellroot_v2.1u3 ']'
+ '[' -f /home/galarowi/krellroot_v2.1u3/lib64/libelf.so -o -f /home/galarowi/krellroot_v2.1u3/lib64/libelf.a ']' 
+ '[' '!' -z /home/galarowi/krellroot_v2.1u3 ']'
+ '[' -f /home/galarowi/krellroot_v2.1u3//libelf.so -o -f /home/galarowi/krellroot_v2.1u3//libelf.a ']' 
+ '[' -d /home/galarowi/krellroot_v2.1u3 ']'
+ '[' -f /home/galarowi/krellroot_v2.1u3/lib64/libelf.so -o -f /home/galarowi/krellroot_v2.1u3/lib64/libelf.a ']' 
+ export LIBELFDIR=/usr
+ LIBELFDIR=/usr
+ '[' -f /usr/include/libelf.h ']'
+ export LIBELFINC=/usr/include
+ LIBELFINC=/usr/include
+ '[' '!' -z ']'
+ '[' '!' -z /home/galarowi/krellroot_v2.1u3 ']'
+ '[' -f /home/galarowi/krellroot_v2.1u3/lib64/libdwarf.so -o -f /home/galarowi/krellroot_v2.1u3/lib64/libdwarf.a ']' 
+ export LIBDWARFDIR=/home/galarowi/krellroot_v2.1u3
+ LIBDWARFDIR=/home/galarowi/krellroot_v2.1u3
+ '[' '!' -z /app/wpostool/COST/binutils-2.23 ']'
+ '[' -f /app/wpostool/COST/binutils-2.23/lib64/libiberty.a ']'
+ export LIBIBERTYLIBDIR=/app/wpostool/COST/binutils-2.23/lib64/libiberty.a 
+ LIBIBERTYLIBDIR=/app/wpostool/COST/binutils-2.23/lib64/libiberty.a
+ cd /home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01
+ rm -rf dyninst-8.2
+ /usr/bin/gzip -dc /home/galarowi/OpenSpeedShop_ROOT/SOURCES/dyninst-8.2.tar.gz 
+ /bin/tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd dyninst-8.2
+ /bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch (dyninst-8.2.patch):'
Patch (dyninst-8.2.patch):
+ /bin/cat /home/galarowi/OpenSpeedShop_ROOT/SOURCES/dyninst-8.2.patch
+ /usr/bin/patch -p1 --fuzz=0
(Stripping trailing CRs from patch.)
patching file CMakeLists.txt
+ pwd
/home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2
+ export DYNINST_ROOT=/home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2 + DYNINST_ROOT=/home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2 
+ '[' '%{target_prefix}' == bgp ']'
+ '[' '%{target_prefix}' == bgq ']'
+ CXXFLAGS=-std=c++0x
+ cmake . -DCMAKE_INSTALL_PREFIX=/home/galarowi/OpenSpeedShop_ROOT/BUILDROOT/dyninst-8.2-1.x86_64/home/galarowi/krellroot_v2.1u3 -DINSTALL_LIB_DIR=/home/galarowi/OpenSpeedShop_ROOT/BUILDROOT/dyninst-8.2-1.x86_64/home/galarowi/krellroot_v2.1u3/lib64 -DINSTALL_INCLUDE_DIR=/home/galarowi/OpenSpeedShop_ROOT/BUILDROOT/dyninst-8.2-1.x86_64/home/galarowi/krellroot_v2.1u3/include/dyninst -DCMAKE_PREFIX_PATH=/home/galarowi/OpenSpeedShop_ROOT/BUILDROOT/dyninst-8.2-1.x86_64/home/galarowi/krellroot_v2.1u3 -DCMAKE_BUILD_TYPE=RelWithDebInfo -DLIBDWARF_LIBRARIES=/home/galarowi/krellroot_v2.1u3/lib64 -DLIBDWARF_INCLUDE_DIR=/home/galarowi/krellroot_v2.1u3/include -DLIBELF_LIBRARIES=/usr/lib64 -DLIBELF_INCLUDE_DIR=/usr/include -DPATH_BOOST= -DIBERTY_LIBRARY=/app/wpostool/COST/binutils-2.23/lib64/libiberty.a 
-- The C compiler identification is unknown
-- The CXX compiler identification is unknown
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- broken
CMake Error at /work1/app/gnu/platforms/x86_64/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake:61 (message): The C compiler "/usr/bin/cc" is not able to compile a simple test program.
CMake isn't choosing the correct compiler here. Try explicitely setting CC=/usr/bin/gcc and CXX=/usr/bin/g++ on the CMake invocation line. 


It fails with the following output:
Change Dir: /home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2/CMakeFiles/CMakeTmp 



Run Build Command:/usr/bin/gmake "cmTryCompileExec780896754/fast"

/usr/bin/gmake -f CMakeFiles/cmTryCompileExec780896754.dir/build.make
CMakeFiles/cmTryCompileExec780896754.dir/build

gmake[1]: Entering directory
`/work1/home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2/CMakeFiles/CMakeTmp' 


/work1/app/gnu/platforms/x86_64/bin/cmake -E cmake_progress_report
/home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2/CMakeFiles/CMakeTmp/CMakeFiles 
1

Building C object
CMakeFiles/cmTryCompileExec780896754.dir/testCCompiler.c.o
/usr/bin/cc -o CMakeFiles/cmTryCompileExec780896754.dir/testCCompiler.c.o 
-c
/home/galarowi/OpenSpeedShop_ROOT/BUILD/spirit01/dyninst-8.2/CMakeFiles/CMakeTmp/testCCompiler.c
as: error while loading shared libraries: libimf.so: cannot open shared 
object file: No such file or directory
libimf.so is an intel compiler library, and should only be used by backend compilers. So I'll guess that /usr/bin/cc is a backend icc compiler. 

-Matt




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